Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0725 ATGGGGCAGAGCTCCGGTGATCATAACGATTATTCCTCGACTTTCAGTGACTGTAACAGCGATAGATCCGGTGAGTTTCCGACGACATCGTCTCAGGGCCGCCGACTGCTGCTAGCCTGCGCTGCGGACAATTGCGATGATCTGATCCGGCAGCTCGTTTCCGATCTCAACTCTTGTTCGATTGATGAGCAAAAGCAAGCCGCCATGGAGATCAGGCTCCTCGCCAAGAACAAGCCCGAGAATCGTCTCAAGATCGCTGGGGCCGGGGCTATCAAGCCGTTGATTTCTCTTATCTCTTCCTCTGATGCTCAGCTTCAAGAGAACGGAGTTACGGCGATTTTGAATCTCTCTCTGTGCGACGAGAATAAGGAACTGATAGCCTCATCGGGAGCTATTAAACCACTGGTTAGAGCTCTCAAGACTGGGACATCAACAGCGAAGGAGAACGCAGCTTGTGCTCTGCTCCGCTTGTCACAGATAGAGGAGAACAAGATTGTAATCGGAATGGCGGGAGCGATTCCGCTGCTAGTGAATCTATTAGGGTATGGTAGTTTTCGGGGGAAAAAGGACGCATCGACGACTCTATATTCGCTATGTTCGGTTAAAGAGAACAAAATCAGAGCAATTCAAGCCGGGATCATGAAGCCTCTGGTGGAATTGATGGCGGATTTTGGGTCCAATATGGTGGATAAAGCAGCTTACGTGTTAAGCCAATTGGTTTCTCTCCCTGAAGGCAAAACTTCTTTGGTTGAGGAAGATGGTATTCCGGTACTCGTGGAGATCCTTGAAGACGGATCGCAGAGGCAGAAAGAAATTGCAGTTGCAATTCTCTTACAGATTTGCGAGGATAGCTTGGCTTATCGCAATATGGTAGCCCGCGAAGGAGCAATTCCTCCTCTGGTCGCATTGTCACAGTCCAGCGCCAATCGCTCTAAACAGAAGGCGGAGGCACTCATTGATCTTCTACGGCAACCAAGATCCGGCAACGTCGCTGCCAGAACGTCAGATGTGTCAGTCTAA 1020 0.499 MGQSSGDHNDYSSTFSDCNSDRSGEFPTTSSQGRRLLLACAADNCDDLIRQLVSDLNSCSIDEQKQAAMEIRLLAKNKPENRLKIAGAGAIKPLISLISSSDAQLQENGVTAILNLSLCDENKELIASSGAIKPLVRALKTGTSTAKENAACALLRLSQIEENKIVIGMAGAIPLLVNLLGYGSFRGKKDASTTLYSLCSVKENKIRAIQAGIMKPLVELMADFGSNMVDKAAYVLSQLVSLPEGKTSLVEEDGIPVLVEILEDGSQRQKEIAVAILLQICEDSLAYRNMVAREGAIPPLVALSQSSANRSKQKAEALIDLLRQPRSGNVAARTSDVSV* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0725 339 Gene3D - 242 332 IPR011989 -
Vvi18g0725 339 Gene3D - 41 241 IPR011989 -
Vvi18g0725 339 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 212 254 IPR000225 GO:0005515
Vvi18g0725 339 PANTHER U BOX DOMAIN-CONTAINING 48 323 - -
Vvi18g0725 339 SMART arm_5 119 159 IPR000225 GO:0005515
Vvi18g0725 339 SMART arm_5 160 200 IPR000225 GO:0005515
Vvi18g0725 339 SMART arm_5 283 323 IPR000225 GO:0005515
Vvi18g0725 339 SMART arm_5 242 282 IPR000225 GO:0005515
Vvi18g0725 339 SMART arm_5 201 241 IPR000225 GO:0005515
Vvi18g0725 339 SMART arm_5 78 118 IPR000225 GO:0005515
Vvi18g0725 339 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 89 131 IPR000225 GO:0005515
Vvi18g0725 339 SUPERFAMILY ARM repeat 44 315 IPR016024 -
Vvi18g0725 339 MobiDBLite consensus disorder prediction 1 29 - -
Vvi18g0725 339 FunFam RING-type E3 ubiquitin transferase 39 328 - -
Vvi18g0725 339 Pfam Armadillo/beta-catenin-like repeat 120 158 IPR000225 GO:0005515
Vvi18g0725 339 Pfam Armadillo/beta-catenin-like repeat 162 200 IPR000225 GO:0005515
Vvi18g0725 339 Pfam Armadillo/beta-catenin-like repeat 79 117 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0725 Vvi-Chr18 7596423 7598040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0725 7 329 U-box Gene Family AT2G23140 47.734 1.48e-90 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0725 - - vvi:100252212 644.81