Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0721 ATGTTGTGTGCTTGCTCGGGAGAGCAATTCAAATTTGAAGATGCACCCCGGTCTCCAGAATCTCTGGCAACAAGAGATTTCTCGGCAAGCGGACTTTCATCCAGGACGGGGGATTGGGAGTCGAAATTTGAAGATACACAAGTTGATGAAGCTGAATCAACTCTAAGGGATGCTCTCTCCTTAAATTACGAGGAAGCCAGAGCTTTACTGGGGCGCCTAGAGTACCAGAGAGGGAACTTTGATGCTGCTTTTCAGGTGTTTCATGGGATTGACATTAGAGGGTTAACTCCAAGGATGACCAGGGCTATTGTTGAACGGACTTGGCAAAGAAAACCACGTACCAAGGGAGATATTGTATCTACCCAGGAAATGTCGATGCATTCTGTGAGCCTTCTTCTGGAGGCAATCTTACTCAAAGCAAAATCACTTGATGAACTGGGGAGAACTGGAGAGGCTGCAAAAGAGTGCAAAATAATTCTGGACACTGTTGAATCGGCACTGCCCAATGGAATGCCAGAGGGCATTGGTGAAGACTGCAAATTGCAGGAGATGTTTCACAAAGCATTAGAGCTGCTCCCAAAGCTGTGGACAAAGGCAGGCTGTCTTGATGAATCGATTGCTGCATATCGTCAAGCTCTAGTAAGGCCCTGGAATTTGGATCCTCGGAGGTTGGCCAGTGTACAAAAGGATTTGGCTGCCATATTACTGTATGGTGGTGTTGAAACAAGCCTTCCTCCTCAATTGCAAGTATGGGGTGCAACTACTCCTAAAAATAACATAGAGGAAGCGATACTTCTATTGTTTATACTCATGAGGAAGGTAGCTTCCCGTGAAATAGATTGGGACCCAGAAATTATGGATCATCTGGCTTATGCACTCACAATTTCTGGGCGGTTTGAGTTTTTGGCAGAGTATGTGGAGCAGGCCCTTCCTGGTGTCTATAACCGAGCTGAAAGGTGGTATTTTCTTGCTCTTTGTTACAGTGCCGCAGGTCAGAATGAAGCAGCATTGAACCTTCTAAAGAAGGTTTCCGGTTGTTCTGAAGCAAAGCACAAACCTCATTTGCCTTCTTTTTTGTTGGGAGCCAAATTGTGTTCGCAAGATCCAAAGCATGCTCATGAAGGGATAAATTTTGCTCGTAAAGTGATTAGTTCCCATGATCAAACCAAGCATTTCATGGGTGAGACACATAAATTCCTTGGTATTTGCTATGGGAATGCAGCAAGAGCTTGTGTGTTGGATTCTGAAAGAGTTGCCCTGCAGACAGATTCTTTGAACTCTCTGAACCAGGCGTCTCTTATTGGGCATAAGGATCCAGAATTAATATTTAGCCTGGCTTTGGAAAATGCTGTGCAAAGAAATCTAGATGCAGCTTTTAGCAATGCAATTATGTACTCAGATATGGTGGCTGGGAGTTCAGGAAGAGGTTGGAAGCTGTTGGCTCTTGTAGTATCTGCAGAGCAACGGTTCAAAGATGCTGAAACCATAGTCGATCTTGCTTTGGATGAGGCTGGAAGGATTGATCAGTTAGAGCTTCTTAGGCTGAAAGCTGTGCTTCAAATTGCTCAGGAGCAGCCCAAACAAGCAATAGAGACGTATAGAATTTTGCTAGCTCTGATTCAAGCACAGAGGGAGGTTCAAGCCAATAAATTTCATTCAGAGGTATCAGCAGAAAGAAACTTGGAAACACAAACATGGCAGGATTTGGCTAACATCTATACGAAACTGGGATTGTGGTCTGATGCAGAAATTTGTTTGGATAAAGCAAAGTCCATTGAATTTTATTCTTCTAGAAGTTGGCATAAAACAGGTATTTCGTTAGAAGCTCAATCACTGTACAAGGAAGCCCTTGTGTCCTTTTCAGTTTCTCTGTCAATAGAACCAGATTATGTTCCTAGCATTGTTTCAACTGCAGAAGTACTGATGAAATTTGGTAAACCATCCCTCCCAATCGCAAGAAGCTTTTTGATGAATGCCTTACGATTAGAACCCACGAATCACGAGGCATGGTTGAACCTTGGATTGGTTTCAAAGATGGAAGGCTCCTTACAACAAGCAGCAGACTACTTCCAGGCAGCATATGAGCTCAAGTTGTCAGCGCCAATTCAAAGCTTTGTATGA 2121 0.4375 MLCACSGEQFKFEDAPRSPESLATRDFSASGLSSRTGDWESKFEDTQVDEAESTLRDALSLNYEEARALLGRLEYQRGNFDAAFQVFHGIDIRGLTPRMTRAIVERTWQRKPRTKGDIVSTQEMSMHSVSLLLEAILLKAKSLDELGRTGEAAKECKIILDTVESALPNGMPEGIGEDCKLQEMFHKALELLPKLWTKAGCLDESIAAYRQALVRPWNLDPRRLASVQKDLAAILLYGGVETSLPPQLQVWGATTPKNNIEEAILLLFILMRKVASREIDWDPEIMDHLAYALTISGRFEFLAEYVEQALPGVYNRAERWYFLALCYSAAGQNEAALNLLKKVSGCSEAKHKPHLPSFLLGAKLCSQDPKHAHEGINFARKVISSHDQTKHFMGETHKFLGICYGNAARACVLDSERVALQTDSLNSLNQASLIGHKDPELIFSLALENAVQRNLDAAFSNAIMYSDMVAGSSGRGWKLLALVVSAEQRFKDAETIVDLALDEAGRIDQLELLRLKAVLQIAQEQPKQAIETYRILLALIQAQREVQANKFHSEVSAERNLETQTWQDLANIYTKLGLWSDAEICLDKAKSIEFYSSRSWHKTGISLEAQSLYKEALVSFSVSLSIEPDYVPSIVSTAEVLMKFGKPSLPIARSFLMNALRLEPTNHEAWLNLGLVSKMEGSLQQAADYFQAAYELKLSAPIQSFV* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0721 706 SUPERFAMILY TPR-like 477 697 IPR011990 GO:0005515
Vvi18g0721 706 Gene3D Tetratricopeptide repeat domain 130 458 IPR011990 GO:0005515
Vvi18g0721 706 ProSiteProfiles TPR repeat profile. 597 630 IPR019734 GO:0005515
Vvi18g0721 706 MobiDBLite consensus disorder prediction 23 37 - -
Vvi18g0721 706 SUPERFAMILY TPR-like 46 342 IPR011990 GO:0005515
Vvi18g0721 706 MobiDBLite consensus disorder prediction 14 44 - -
Vvi18g0721 706 ProSiteProfiles TPR repeat profile. 667 700 IPR019734 GO:0005515
Vvi18g0721 706 SMART tpr_5 510 543 IPR019734 GO:0005515
Vvi18g0721 706 SMART tpr_5 667 700 IPR019734 GO:0005515
Vvi18g0721 706 SMART tpr_5 317 350 IPR019734 GO:0005515
Vvi18g0721 706 SMART tpr_5 474 507 IPR019734 GO:0005515
Vvi18g0721 706 SMART tpr_5 563 596 IPR019734 GO:0005515
Vvi18g0721 706 SMART tpr_5 597 630 IPR019734 GO:0005515
Vvi18g0721 706 Gene3D Tetratricopeptide repeat domain 481 703 IPR011990 GO:0005515
Vvi18g0721 706 PANTHER PROTEIN NPG1 1 705 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0721 Vvi-Chr18 7566725 7569958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0721 1 706 Calmodulin-binding Proteins AT1G27460 63.764 0.0 914
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0721 K21843 - vvi:100241952 1390.17