Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0716 ATGGCGTTCGCAGGAACAACCCAGAAATGCATGGCCTGCGATAAGACTGTGTATCTGGTGGATAAGTTAACTGCAGACAACCGAGTCTACCACAAGGCCTGCTTCAGATGCCATCACTGCAAAGGGACCCTCAAGCTTGGAAACTACAATTCCTTTGAGGGAGTACTTTATTGCAGGCCACACTTTGATCAACTCTTCAAGAGGACTGGCAGTCTAGACAAAAGCTTTGAAGGGACACCAAAAATTGTGAAACCAGAGAAACCAATTGATAGTGAGAAACCCATAGCAAATAAAGTGTCTAGCATGTTTGCGGGAACCAGAGATAAATGCGTGGGCTGTAAGAATACTGTCTATCCGACTGAGAAGGTCACCGTGAATGGAACTGCATATCACAAGAGCTGTTTCAAATGCACCCATGGCGGGTGTACGATCAGCCCATCCAACTACATCGCACATGAGGGGCGGCTCTACTGCAAACACCACCACACCCAACTGATCAAGGAAAAGGGAAACTTGAGCCAGCTTGAGGGTGACCATGAGAAGGACACAGCTAATGAGAAAGTGAATGGCAGAGAAGTTGCTGCTGAATCATAA 594 0.4697 MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIVKPEKPIDSEKPIANKVSSMFAGTRDKCVGCKNTVYPTEKVTVNGTAYHKSCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGDHEKDTANEKVNGREVAAES* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0716 197 SMART lim_4 109 161 IPR001781 -
Vvi18g0716 197 SMART lim_4 9 61 IPR001781 -
Vvi18g0716 197 Pfam LIM domain 10 64 IPR001781 -
Vvi18g0716 197 Pfam LIM domain 110 164 IPR001781 -
Vvi18g0716 197 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Vvi18g0716 197 PANTHER OS06G0237300 PROTEIN 4 88 - -
Vvi18g0716 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Vvi18g0716 197 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Vvi18g0716 197 FunFam LIM domain and actin-binding 1 104 174 - -
Vvi18g0716 197 CDD LIM2_SF3 110 170 - -
Vvi18g0716 197 Gene3D Cysteine Rich Protein 104 174 - -
Vvi18g0716 197 Gene3D Cysteine Rich Protein 4 74 - -
Vvi18g0716 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Vvi18g0716 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vvi18g0716 197 CDD LIM1_SF3 6 68 - -
Vvi18g0716 197 FunFam LIM domain and actin-binding 1 4 74 - -
Vvi18g0716 197 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vvi18g0716 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Vvi18g0716 197 MobiDBLite consensus disorder prediction 171 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0716 Vvi-Chr18 7537715 7539201 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vvi18g0716 LIM 8.7e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0716 K09377 - vvi:100253922 422.935