Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0691 ATGCCGATGTACCAGCCATCTGGCCGGAGAAGAGATGGGGGTGTCATGTATGATGTGGGCGGCGACGGTGGGCATGTCTTAGATCTCGAAACCGCCGTGAAAGATGGGATTTTGGGGGGCGGAGGTGGGGTTGTTTGCGGCAGCGGAGTCACTGAGAAATTGGATCTGAAAAAGATGATTGAAGACCTGGACTCCATTGATGTTCCGTCTGTGTTCATATGCCCAATTTCGTTAGAGCCAATGCAGGATCCTGTGACCATTTGCACTGGCCAGACCTACGAGAGATCCAACATCGTGAAATGGTTCTCTATGGGGCACTTCACTTGCCCCACAACAATGCAAGAGCTTTGGGACGATTCCATCACGCCAAACAAGACTCTTTACCAACTAATTTATAGTTGGTTTTCGCAGAAGTACTTGGTCATGAAGAAGAGATCAGAAGATGTGCAAGGCAGAGCATTGGAAGTCTTGGAGACGTTAAAGAAAGTTAAGGGTCAAGCTAGGATTCAAGCCCTCAAGGAACTTCGACAGGTTGTCTCAATTCATGCTTCTGCCAAGAAGACGGTGGCAGACAATGGTGGTATCGGTCTGATTTCCTCTCTATTAGGCCCCTTCACTTCGCATGCAGTAGGGTCGGAAGTAATTGGGATTCTTGTGAACTTGAGTCTCGATTCAGAATCAAAGTCAAATTTGATGCAGCCAGCAAAGATATCACTAATGGTGGACATGTTGAATGAGGGATCAATCGAGACCAAAATCAATTGTACAAAATTGATCGAAATTTTGATGGAGGGGAGGGATTTTGAATCGGAGATTGTGCCAAGCTTGAGTCTTTTGGTTGGATTGTTGAGGTTGGTAAAGGATAAGAGGCACCAAAATGGGATCTTGGCTGGCCTCGCCCTGCTCAAGACAATTTGTTTACACGAGCCAGTGCGGAACTCAGTAGTGAGCATAGGGGCTGTTCCTCAATTGGTTGAGCTGTTGCCCAATTTGAATCCCGCGTGCCTGGAATTAGCCCTTTATATCCTGGAGGTTCTGTCAACTCTTCCACAGGGAAGATTGGCTTTGAAGGATTGCCCAAACATGATACCAAATGTAGTGAAATTATTGATGAGGGTTTCCGAGAGCTGTACCCAGTTGGCATTGGCCATCTTATCAGCAGTTTGCAAGCTTGCCCCAGAGGAATGTGCTTCACTTGCCGTGGAAGCTGGCCTTGCTGCGAAGCTCCTCCTCGTTATTCAGAGTGGTTGCAATCCTGTATTGAAGCAAAGGGCTGCAGAGCTCTTAAAATTGTGTAGTCTAAATTACACGGCCACCATCTTCATATCCAAGTGTAAGCTTACAAGAACGATACAATGA 1359 0.468 MPMYQPSGRRRDGGVMYDVGGDGGHVLDLETAVKDGILGGGGGVVCGSGVTEKLDLKKMIEDLDSIDVPSVFICPISLEPMQDPVTICTGQTYERSNIVKWFSMGHFTCPTTMQELWDDSITPNKTLYQLIYSWFSQKYLVMKKRSEDVQGRALEVLETLKKVKGQARIQALKELRQVVSIHASAKKTVADNGGIGLISSLLGPFTSHAVGSEVIGILVNLSLDSESKSNLMQPAKISLMVDMLNEGSIETKINCTKLIEILMEGRDFESEIVPSLSLLVGLLRLVKDKRHQNGILAGLALLKTICLHEPVRNSVVSIGAVPQLVELLPNLNPACLELALYILEVLSTLPQGRLALKDCPNMIPNVVKLLMRVSESCTQLALAILSAVCKLAPEECASLAVEAGLAAKLLLVIQSGCNPVLKQRAAELLKLCSLNYTATIFISKCKLTRTIQ* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0691 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 141 IPR013083 -
Vvi18g0691 452 Gene3D - 142 448 IPR011989 -
Vvi18g0691 452 ProSiteProfiles U-box domain profile. 67 141 IPR003613 GO:0004842|GO:0016567
Vvi18g0691 452 SUPERFAMILY ARM repeat 147 436 IPR016024 -
Vvi18g0691 452 SMART Ubox_2 71 134 IPR003613 GO:0004842|GO:0016567
Vvi18g0691 452 SUPERFAMILY RING/U-box 62 138 - -
Vvi18g0691 452 PANTHER WDSAM1 PROTEIN 64 436 IPR045185 GO:0061630
Vvi18g0691 452 Pfam U-box domain 68 138 IPR003613 GO:0004842|GO:0016567
Vvi18g0691 452 CDD RING-Ubox_PUB 69 119 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0691 Vvi-Chr18 7291065 7292423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0691 1 452 U-box Gene Family AT3G49810 69.248 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0691 - - vvi:100255725 830.091