Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0684 ATGATATCGAACAGGGAGTCAGCTCGGCGGTCTCGTTGGAGAAAGAAGAAGCATTTAGAAAACCTTTCGAACGAGGTGAACCGGTTGCTTGTCCAGAACCGGGAGTACAAGCACCGGTTGGGCTCAGTTACGCATCAGTGCCACCTAGTAGGGAGAGATAACGAGCGGCTGACATACGAATATTTGGCTCTCAGGACCAAACTTTACGACTTATATCGGATTTTGGTCACCATGCAGCTCCAATAA 246 0.4878 MISNRESARRSRWRKKKHLENLSNEVNRLLVQNREYKHRLGSVTHQCHLVGRDNERLTYEYLALRTKLYDLYRILVTMQLQ* 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0684 81 CDD bZIP_plant_GBF1 1 48 IPR045314 GO:0003700|GO:0006355
Vvi18g0684 81 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 78 - -
Vvi18g0684 81 Gene3D - 1 49 - -
Vvi18g0684 81 Pfam bZIP transcription factor 1 48 IPR004827 GO:0003700|GO:0006355
Vvi18g0684 81 Coils Coil 19 39 - -
Vvi18g0684 81 SMART brlzneu 1 56 IPR004827 GO:0003700|GO:0006355
Vvi18g0684 81 FunFam BZIP transcription factor 1 45 - -
Vvi18g0684 81 SUPERFAMILY Leucine zipper domain 1 49 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0684 Vvi-Chr18 7185419 7185664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0684 1 71 bZIP Transcription Factor Family AT4G37730 50.704 2.03e-15 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi18g0684 bZIP_1 1e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0684 - - vvi:104882517 166.392