Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0678 ATGGATTTTGGGGTGATGGGTTTGGATGGGTTGGTGGGTTCAGACACTGGTTTAGCTTCTCTTGGTTCAGATCCTGAGACCAAGCAAAAGTGGTACGGATCTGGGTTCCTCAAGCAAGAGAGATCTGGGGCTACTGAAGATGATTGGAAGAGCTTAAAGATTGCCAAAACTGATGATTTCTCAGCCTCCAAGGCAATGCTGCTTCCACACAGAAATGCTTTACTGAGATCTAATACCACTCTCTTCTCTGATGCTGGTCAGCAAGAACAGCAGATGCTCAGCTTCTCTTCTCCCAAATCAGAACCTCTATTTATGGAGAGGAGCTCTCAGAATGCCATATTTCCCTACTATCACCACACATCCTCTGCTTATAATAGAAATACAGGTTACAGCTCTGGGAACTTGAATGGTGGAAGCATGCATGGGGTTATGGCAGGGGTTAGAGGGCCATTCACCCAATCTCAATGGATGGAGCTAGAACACCAGGCCTTGATCTACAAGTACATCACTGCAAATGTGCCTATACCATCAAACTTGCTCATGCCCATCAGAAAAGCCCTTGATTCCGTTGGGTTCTCTACCTTTTCTGCCGGAGCTCTCAGACCCAATACATTGGGATGGGGTTCTTTCCATCTGGGTTTCTCCAACAATACCGATCCTGAGCCAGGACGATGTCGGAGGACTGATGGGAAGAAATGGCGGTGCTCAAGAGATGCAGTTGCCGATCAGAAGTATTGTGAGCGGCACATGAACAGGGGCCGTCATCGTTCAAGAAAGCCTGTGGAAGGCCAAACCGGCCATTCCGTCCCCGGACCCACCACCACTGCCACAAAGCTGATGCCTATTACTTCCTCTTCATCAGCATCAGTGGTGCCCGGTGGCGGCACATCCAACAGCCTTGCCATTGCGCATCACCAGATCAAGAATTTGCATCCAGGTGCATCTAATCCTTCTGCAGCCACCCCTATCAATAGGATATTTTTGAACAAAGAGAATGTGGGTGAGAGAATGCAAGAGACACAAGGCCTATCCATCTTATCTTCCACCATTGACCAGAAATCTAAAGAAAACCAATTCTCCTTGCCAAAACAGCAGATCCCATATGAAGAATCCTCTCGAGCTGGGTTTGGTCTCGTCCCCTCCAACTCCCTCCTCAGTAAAAGCTCCTCCTTCATGAACTGCAGAAACTTTGGTTCTTCCCAAGACCTCAACAACCATGAGCCTGACTCACAACATTCCCTTCGCCATTTTATAGATGACTGGCCCAAAAACCAGTCAGACCGGACTGCCATTTCTTGGCCTGATATTGATTTGCAATCAGATAGGACCCAGCTCTCAATTTCAATCCCCATGGCTTCCTCAGACTTCATGTCTTCCACTTCCTCACCCACAAATGACAAACTCACGCTCTCACCACTGAGATTATCACGTGAATTTGACCCGATTCAAATGGGCTTGGGAGTGGGAAGTGTCCTCAATGAACCAAACCAAAGGCAAGCCAATTGGATTCCCATCTCTTGGGAAACTTCCATGGGAGGACCTCTAGGAGAGGTTCTGCACAGCACTAATAACAATGGAGGGGACTGCAAGAACTCGTCAGCTCTTAACCTCATGACAGAGGGTTGGGATGGCAGCCCACGACTAGGGTCATCCCCCACTGGTGTTTTACAGAAGACTTCATTTGGTTCACTTTCTAACAGCAGTGCGGGGAGCAGCCCAAGAGCAGGGAACAAGAAAACCAATGATGGGGCTAGCCTTTGCAATGATCTACTCGGCTCAACCCTTGTTAATTCTTCCTCACTGCCATCCTTGTAA 1815 0.4832 MDFGVMGLDGLVGSDTGLASLGSDPETKQKWYGSGFLKQERSGATEDDWKSLKIAKTDDFSASKAMLLPHRNALLRSNTTLFSDAGQQEQQMLSFSSPKSEPLFMERSSQNAIFPYYHHTSSAYNRNTGYSSGNLNGGSMHGVMAGVRGPFTQSQWMELEHQALIYKYITANVPIPSNLLMPIRKALDSVGFSTFSAGALRPNTLGWGSFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEGQTGHSVPGPTTTATKLMPITSSSSASVVPGGGTSNSLAIAHHQIKNLHPGASNPSAATPINRIFLNKENVGERMQETQGLSILSSTIDQKSKENQFSLPKQQIPYEESSRAGFGLVPSNSLLSKSSSFMNCRNFGSSQDLNNHEPDSQHSLRHFIDDWPKNQSDRTAISWPDIDLQSDRTQLSISIPMASSDFMSSTSSPTNDKLTLSPLRLSREFDPIQMGLGVGSVLNEPNQRQANWIPISWETSMGGPLGEVLHSTNNNGGDCKNSSALNLMTEGWDGSPRLGSSPTGVLQKTSFGSLSNSSAGSSPRAGNKKTNDGASLCNDLLGSTLVNSSSLPSL* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0678 604 SMART QLQ_2 149 185 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi18g0678 604 MobiDBLite consensus disorder prediction 538 584 - -
Vvi18g0678 604 ProSiteProfiles WRC domain profile. 219 263 IPR014977 -
Vvi18g0678 604 ProSiteProfiles QLQ domain profile. 150 185 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi18g0678 604 PANTHER GROWTH-REGULATING FACTOR 5 87 455 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vvi18g0678 604 Pfam WRC 220 262 IPR014977 -
Vvi18g0678 604 MobiDBLite consensus disorder prediction 550 584 - -
Vvi18g0678 604 MobiDBLite consensus disorder prediction 252 279 - -
Vvi18g0678 604 Pfam QLQ 150 184 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0678 Vvi-Chr18 7086700 7089964 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0678 29 604 GRF Transcription Factor Family AT2G22840 45.246 3.83e-118 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vvi18g0678 WRC 3.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0678 - - vvi:100260890 1200.27