Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0677 ATGGCGGAGCAGGTCAAGTTGTTCGTTGGGGGAGTTTCCGGCGCCATCACCGAAGGGCTGCTGAGGGACTACTTCAGCAAGTACGGTACTGTTGTGGAGACTTACATTAGAAGGGATTCTGGGAGAACGCCTAGAGGGGGCTTTGGATTTGTTACTTTTGCTGACGCTGCTTCCCTCAGTAGAGCTCTCCAGGATCAGCAGCAGCATTTTATACAAGGACAAAGGGTCGAAGTGAAAAGGGCGATGAACAAAGGTCAGAGAAATTTAGATGGTAGTGGCAATAATAATTTTACGTCGAAAAAGATCTTTGTGGGAGGGTTATCATCTAATCTAACAGAGGAAGAATTCAAGAATTACTTTGAGAGGTTTGGTAGAATTACAGATGTAGTTGTGATGCACGATAGCGCTACTCGCCGCCCGAGGGGATTTGGGTTCATTACTTTTGAGTCTGAGGAATCTGTTGAGCATGTTATGCAGAATAACTTCTATGAGTTAAATGGAAAGCGTGTGGAGGTGAAGAGAGCCGTGCCAAAAGAAGCAAACAACAATAATAAAAATGGTTATAATATGAGGATGGGTGGTGGAAGAGGGTCTTCCTTTCCTCTGCATGGGCAGAACTTGCCTTATGCTCCTGCTCCTGGATATGAGATTTTTCCAGGTTATTTTCCTTATTCAGGATATGGATGTATTGAAAATTATTGTTATGCTGCAACTAGCATGTATCCTGGTGGTTACTTTATGGGAGAGAATGCTGGAATTGACTATGGAAGGACACCTTTTCAGCACCCTTGGAATGGCCCTGGATCTCTTGGCAGTGCTATCATGTATCCTCCATACTCAAGTGGTAGGAACATGGTTGCTGGTTCGTCTAATGGGCTTGTAGGGCCAAGAACAAGCTCTAGATCACAAGCTGATGCGACCCCAACCCCATCTCAGAATGACTCTTCCTTGGAGGATGCTAATGGTAACTTCAATCCTCCCTCTTTGGTCCTGAACAATTCAGTTGGGGGAAAGTTGGGTATGGTTTGCAATGGTGAAGCTCCTAATTCGGCTGGGGAGAACTCTGGACCTCATTCTTTGAAGGATGATGGTGCTGTTTCTTCACCTTTGAAAGAAGATGGTTCTGAATTTTCTTCGCATTTGAAGGTTGATTGTGCTGCATCTCCTTCAGATTCAAAGGATGATGGTACTGTTTCTCCTTCAGATTCCTTTGATGGTGCTGCTTCTCCAGATATAAAGGGTGATGGTGTGGCTTCTTCTTCAGATTCGTACGACAATGGTTCTACTTGTAGCTTGAATACAAGCACTGATAATTTGGAGTGCAATGGTGCTGCTTCTAATTCTAGTTACGACATACAAAATCAAAATGATATTGATGAACAACTTAAGCCTTCCCCTGATTGTGATTCTAGCTGA 1416 0.4393 MAEQVKLFVGGVSGAITEGLLRDYFSKYGTVVETYIRRDSGRTPRGGFGFVTFADAASLSRALQDQQQHFIQGQRVEVKRAMNKGQRNLDGSGNNNFTSKKIFVGGLSSNLTEEEFKNYFERFGRITDVVVMHDSATRRPRGFGFITFESEESVEHVMQNNFYELNGKRVEVKRAVPKEANNNNKNGYNMRMGGGRGSSFPLHGQNLPYAPAPGYEIFPGYFPYSGYGCIENYCYAATSMYPGGYFMGENAGIDYGRTPFQHPWNGPGSLGSAIMYPPYSSGRNMVAGSSNGLVGPRTSSRSQADATPTPSQNDSSLEDANGNFNPPSLVLNNSVGGKLGMVCNGEAPNSAGENSGPHSLKDDGAVSSPLKEDGSEFSSHLKVDCAASPSDSKDDGTVSPSDSFDGAASPDIKGDGVASSSDSYDNGSTCSLNTSTDNLECNGAASNSSYDIQNQNDIDEQLKPSPDCDSS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0677 471 CDD RRM2_Hrp1p 101 178 - -
Vvi18g0677 471 SUPERFAMILY RNA-binding domain, RBD 96 199 IPR035979 GO:0003676
Vvi18g0677 471 MobiDBLite consensus disorder prediction 287 331 - -
Vvi18g0677 471 FunFam RNA-binding protein 1 96 186 - -
Vvi18g0677 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Vvi18g0677 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 5 83 IPR000504 GO:0003723
Vvi18g0677 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 76 IPR000504 GO:0003723
Vvi18g0677 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Vvi18g0677 471 Gene3D - 2 89 IPR012677 -
Vvi18g0677 471 MobiDBLite consensus disorder prediction 419 461 - -
Vvi18g0677 471 SMART rrm1_1 6 79 IPR000504 GO:0003723
Vvi18g0677 471 SMART rrm1_1 101 173 IPR000504 GO:0003723
Vvi18g0677 471 MobiDBLite consensus disorder prediction 365 379 - -
Vvi18g0677 471 MobiDBLite consensus disorder prediction 346 471 - -
Vvi18g0677 471 SUPERFAMILY RNA-binding domain, RBD 5 93 IPR035979 GO:0003676
Vvi18g0677 471 Gene3D - 97 189 IPR012677 -
Vvi18g0677 471 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0677 Vvi-Chr18 7074870 7076604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0677 7 243 Eukaryotic Initiation Factors Gene Family AT3G16380 26.613 1.67e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0677 K14411 - vvi:100255821 944.495