Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0674 ATGAAGTCTATGAATGATAATAACAATGGCAGCAATAATAACTGGTTGGGTTTCTCGCTCTCGCCACATATGAAAATGGAGGTTGCTTCAGACCCTCAGTACCATCATCAAACCCAGCCTGCTGCTGCCGCTGTTTCCAGTGCTGTCCCAACAAGTTTCTTTCTCTCTCCTCATCTCAACAGCTCCGCAATCTACTATGGTGTTGGAGAAAATGGCGCTTTTCACTCACACTTGTCCGTAATGCCACTCAAGTCTGATGGGTCTCTTTGTATCATGGAGGCTCTCAGTAGATCACAGCAAGAAGGGATGGTGCCAACCTCATCACCAAAACTGGAGGACTTCTTAGGTAGTGCAACCATGGCAACCCATCAGTACGGGGGCCATGAAAGAGAAGCAATGGCTCTCAGCTTAGACAGCATGTATTATCACCAAAATGCGGAACCTGAAACCAGTAGGCAACATTCTCTAAACCTTCTTCAGGAATCCTTTAGGCAACAAGGTCAGCAACAAATTCCAGTTCAACACCACCCATATTTCACTGGACTTGCCTGCAATGGGATTTACCAGAACCCATTAGAAGAAGAAACAAAGGAAACCCAACTTGCAGATTGCCATACCCAGATCCCTCCTATGGGGGAGGATGGAATGCCTTGCCTGAAAAACTGGGTTGCAAGGCACTACTCGACTCACCATGCACTAGAGCAGCAGATGAACAACAGCATCGTTGATGACGGAGGAGCTCCTGGGTCTATTGGAGCTATGGGTTGTGGGGATTTACAGTCTCTCAGCTTGTCCATGAGCCCCGGTTCTCAGTCAAGCTGTGTGACAGCTCCAAGACAGATCTCGCCTACCGGAGCTGAGTGTGTGGCCATGGAAACAAAGAAAAGGGGGTCCGGAAAAGTTGCACAAAAGCAACCAGTTCATAGGAAGTCCATTGACACATTTGGGCAGAGGACTTCACAATATAGAGGAGTTACAAGGCATAGATGGACTGGTAGATATGAAGCCCATCTTTGGGATAATAGTTGCAAGAAGGAGGGGCAGACTAGGAAAGGAAGACAAGTTTATCTGGGGGGGTATGATATGGAAGAGAAAGCTGCAAGAGCTTACGATCTGGCGGCCCTCAAATACTGGGGACCTTCTACTCATATCAACTTCCCGTTAGAAAATTACCAAGAAGAACTCGAAGAAATGAAGAACATGAGCCGCCAGGAATATGTTGCTCATCTGAGAAGGAAAAGCAGTGGATTCTCAAGAGGGGCTTCAATGTATAGAGGAGTGACAAGGCATCATCAACATGGAAGATGGCAGGCTCGGATTGGGAGGGTTGCTGGAAACAAGGACCTTTATCTCGGGACATTCAGTACCCAAGAGGAAGCAGCTGAAGCTTATGATGTTGCTGCTATTAAGTTCCGAGGGGTAAATGCAGTCACCAACTTTGATATTACACGATATGATGTGGAAAGAATCACAGCCAGCAATACTTTGATTGCTGGAGAGCTTGCAAAGCGAAGCAAAGGGAAAGAACCAAGCCGGGAGGCCATTGATTACAACCCACCTCAGAACAGTGGGGAGGCTATTCAATCTGAAAGTAACAATGGGAATGGTACAGACTGGAAGATGGCTCTATACCAGTCCCCCCAGCAGCAGCCAAGTAGTTGTGTGGAATCACTTGAACAGAAACCAATGAGCATTGGAGGGTACAGGACCACCTCTTTTTCAATGGCATTGCAAGATCTTATTGGGATTGATTCAGTGAACACAAGCCAGCCCATTGGGGATGAATCGACCAAACTAGGGACGCACTTTTCCAATCCATCGTCCTTGGTGACCAGCTTGAGCAGCTCAAGAGAAGCTAGCCCAGATAAAACTGGCCCTGCAATGCTGTTTGCAAAGCCTCCATTAGCATCAAAATTGATGGGGCCTGCAAGCGCACTCAGTTCATGGATCCCAACATCCCAGCTGAGGACTGCTGCAGTTTCCATGGCTCACTTGCCCCTTTTTGCTGCTTGGAATGATACCTAA 2025 0.4746 MKSMNDNNNGSNNNWLGFSLSPHMKMEVASDPQYHHQTQPAAAAVSSAVPTSFFLSPHLNSSAIYYGVGENGAFHSHLSVMPLKSDGSLCIMEALSRSQQEGMVPTSSPKLEDFLGSATMATHQYGGHEREAMALSLDSMYYHQNAEPETSRQHSLNLLQESFRQQGQQQIPVQHHPYFTGLACNGIYQNPLEEETKETQLADCHTQIPPMGEDGMPCLKNWVARHYSTHHALEQQMNNSIVDDGGAPGSIGAMGCGDLQSLSLSMSPGSQSSCVTAPRQISPTGAECVAMETKKRGSGKVAQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQEELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDITRYDVERITASNTLIAGELAKRSKGKEPSREAIDYNPPQNSGEAIQSESNNGNGTDWKMALYQSPQQQPSSCVESLEQKPMSIGGYRTTSFSMALQDLIGIDSVNTSQPIGDESTKLGTHFSNPSSLVTSLSSSREASPDKTGPAMLFAKPPLASKLMGPASALSSWIPTSQLRTAAVSMAHLPLFAAWNDT* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0674 674 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 105 556 - -
Vvi18g0674 674 MobiDBLite consensus disorder prediction 502 540 - -
Vvi18g0674 674 MobiDBLite consensus disorder prediction 516 540 - -
Vvi18g0674 674 PRINTS Ethylene responsive element binding protein signature 322 333 IPR001471 GO:0003700|GO:0006355
Vvi18g0674 674 PRINTS Ethylene responsive element binding protein signature 463 483 IPR001471 GO:0003700|GO:0006355
Vvi18g0674 674 Pfam AP2 domain 321 379 IPR001471 GO:0003700|GO:0006355
Vvi18g0674 674 Pfam AP2 domain 424 473 IPR001471 GO:0003700|GO:0006355
Vvi18g0674 674 CDD AP2 320 387 IPR001471 GO:0003700|GO:0006355
Vvi18g0674 674 ProSiteProfiles AP2/ERF domain profile. 423 481 IPR001471 GO:0003700|GO:0006355
Vvi18g0674 674 SUPERFAMILY DNA-binding domain 320 389 IPR016177 GO:0003677
Vvi18g0674 674 CDD AP2 422 483 IPR001471 GO:0003700|GO:0006355
Vvi18g0674 674 Gene3D AP2/ERF domain 320 389 IPR036955 GO:0003700|GO:0006355
Vvi18g0674 674 Gene3D AP2/ERF domain 423 483 IPR036955 GO:0003700|GO:0006355
Vvi18g0674 674 ProSiteProfiles AP2/ERF domain profile. 321 387 IPR001471 GO:0003700|GO:0006355
Vvi18g0674 674 SMART rav1_2 321 393 IPR001471 GO:0003700|GO:0006355
Vvi18g0674 674 SMART rav1_2 423 487 IPR001471 GO:0003700|GO:0006355
Vvi18g0674 674 FunFam AP2-like ethylene-responsive transcription factor ANT 320 389 - -
Vvi18g0674 674 FunFam AP2-like ethylene-responsive transcription factor 422 483 - -
Vvi18g0674 674 Coils Coil 388 408 - -
Vvi18g0674 674 SUPERFAMILY DNA-binding domain 422 482 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0674 Vvi-Chr18 7050531 7053800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0674 404 674 AP2-EREBP Transcription Factor Family AT4G37750 26.936 4.62e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vvi18g0674 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0674 K09285 - vvi:100252316 1331.62