Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0673 ATGGGTATTGATGACAATGGTAATATGGGGTTTCCAAATACAAGTCAGAGTATTTTGAATTGCCCATCTTCAGGGATGAACACACATCCAATCTCTGAGAAGGTTACAGGAATGACAATGAGCTCGGCGTCCATGTATAAATCTTCAAATGGAGGAGACCCTTTCTTTGGTTCTGGTTGGGATCCCATTGTGTCCTTAAGTCAGAATGAGAATTTTGGAGGGTCTTCAATGGTTTCTCACAGTGAGTTTGCTAATTCTGCTTACCCTGTTGTACTGGAAAATCAGGGAATTGGTAGCACCCCCCACCTTGTTCTCTACCCATCTAATTCAAGTCTAGTAGAGATGGTGCCGAAGCTTCCATGCTTTGGCAGTGGGAGTTTCTCCGAAATGGTTGCTTCGTTTGGCCTACCTGAGTGTGGCCAGACTGCTAATTCTGGGTGCCCTCCAAATTTTCCCCCAAACAAGGAGGGTCTCACTGAGAAAAGCTTAAATGGTGCACAATCTCAAGAGGGCCACCAAATTTCAGAAGGCGATGCCGTGGATGCTTCACCTAGTGGAAAGAGAAGAAAAAGTTCCTTTGATCCTCGTCCTCCATTGAATACCAGCAAGAGTGCTGATGGAGAACAACCAAAGGGTCTCCCTTGGGAAAATTCTGAGTTTTCAAAAGAACAAGAAGAGAAGAAACTAAAGATTGATCAAAACATGAGTCCAAATTTACGTGGTAAGCAACCAAATAAACATGCTAAAGACAATTCTAGCAATGGAGAAGCTCCTAAAGAAAATTACATTCACGTGAGGGCCAGAAGGGGCCAGGCGACTAATAGTCACAGCCTTGCTGAAAGGGTCAGAAGAGAAAAGATCAGTGAGCGTATGAGACTGCTTCAAGAACTTGTTCCAGGATGTAATAAGATTACTGGGAAGGCAGTAATGCTTGATGAGATTATCAATTATGTACAGTCACTGCAACAACAGGTTGAGTTTCTGTCAATGAAACTTGCCACTGTCAATCCAGAACTGAACATTGATATAGAACGACTTCTATCGAAAGATATTCTTAATTCACGGGGTGGCAGTACATCTGTTCTTGGGTTTGGTCCAGGAATGAGCTCTTCTCATCCTTACCCGCATGGAATTTCCCAGGGAACCTTGCCAGGTATCCCGACTCCACAATTTCATTCCACTCAGGCTGTATGGGATGGTGAACTCCAAAGTCTTCTCCAAATGGGATTTGATTCTAACCCATCTAGCAACAATCTGGGAACAAATGCAGGCCGCTCAAAACTGGAGCTATAG 1293 0.4385 MGIDDNGNMGFPNTSQSILNCPSSGMNTHPISEKVTGMTMSSASMYKSSNGGDPFFGSGWDPIVSLSQNENFGGSSMVSHSEFANSAYPVVLENQGIGSTPHLVLYPSNSSLVEMVPKLPCFGSGSFSEMVASFGLPECGQTANSGCPPNFPPNKEGLTEKSLNGAQSQEGHQISEGDAVDASPSGKRRKSSFDPRPPLNTSKSADGEQPKGLPWENSEFSKEQEEKKLKIDQNMSPNLRGKQPNKHAKDNSSNGEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNIDIERLLSKDILNSRGGSTSVLGFGPGMSSSHPYPHGISQGTLPGIPTPQFHSTQAVWDGELQSLLQMGFDSNPSSNNLGTNAGRSKLEL* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0673 430 SMART finulus 277 327 IPR011598 GO:0046983
Vvi18g0673 430 MobiDBLite consensus disorder prediction 409 424 - -
Vvi18g0673 430 FunFam Basic helix-loop-helix transcription factor 268 340 - -
Vvi18g0673 430 MobiDBLite consensus disorder prediction 1 32 - -
Vvi18g0673 430 CDD bHLH_AtBPE_like 261 346 - -
Vvi18g0673 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 321 IPR011598 GO:0046983
Vvi18g0673 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 338 IPR036638 GO:0046983
Vvi18g0673 430 MobiDBLite consensus disorder prediction 218 233 - -
Vvi18g0673 430 MobiDBLite consensus disorder prediction 409 430 - -
Vvi18g0673 430 MobiDBLite consensus disorder prediction 160 174 - -
Vvi18g0673 430 MobiDBLite consensus disorder prediction 145 258 - -
Vvi18g0673 430 Pfam Helix-loop-helix DNA-binding domain 274 322 IPR011598 GO:0046983
Vvi18g0673 430 MobiDBLite consensus disorder prediction 8 32 - -
Vvi18g0673 430 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 170 389 IPR024097 GO:0006355
Vvi18g0673 430 Gene3D - 268 343 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0673 Vvi-Chr18 7033902 7036154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0673 35 430 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 42.157 1.55e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi18g0673 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0673 - - vvi:100247194 872.463