Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0660 ATGGGGAGGGCACCTTGCTGTGACAAAGCCAACGTCAAGAAAGGCCCATGGTCGCCTGAAGAAGATGCCAAGCTCAAGTCATATATTGAGCAGCATGGCACTGGTGGTAATTGGATCGCTTTGCCACAAAAAATTGGCCTCAAGAGATGTGGGAAGAGCTGCCGCCTTAGATGGTTAAACTATCTCCGCCCAAATATCAGGCACGGAGGATTCTCTGAAGAAGAAGATAACATCATCTGTAGCCTGTATATAAGTATTGGAAGCAGGTGGTCTGTTATTGCAGCACAATTACCAGGACGAACTGACAATGATATAAAGAACTACTGGAATACGAGACTGAAGAAGAAGCTCCTTGGTAAGCAGCGCAAAGAACAACAGGCTCGCAGAGGTAGCTGCCCGAAGCAAGAGATGAAAAGAGCAAGTGGGAACGCCATGGTTTCTGATAATGAAAACTTAAACCCTTACTGGCCTGAGTTGCCCGTGCCAGCACCAATACCGTACCCAAACGAAGAACCACGCTTCAACGATCATTCATCCATCAGAAGATTGTTGATCAGGCTTGGGGGAAGATTTTCTGATGACGGACAACCACTCCAAAACGGGACAAATCTTCAGCTCCCGATTGATATTTCATCCGTTCAACAACCTTTTGACCACTCAGTAAACTTTCTGTCTTCTTCTCCTATGAATGCCCTAAACAACCCTCGTTCTGAATTTCCAAACGCTGAGTACAATATGGAAGGGGGAGGGCTACACATGCTACAAGGACAGAACAGTTTTTTAGCTGAGCTGGAGGAGATGGCTTGTAGCAACCCACAAAGATTAGATGGGCTGGAGTTCTTATATGCGCAGGACATGGCCAATAACAAACCCGGATCAACTGCTTATGAGCAAAGTCTCAGTTGGGGTGAGACGAGCTCTCTGGTTTATCCTCCTGTTGCTTCCAACTATGAAGGTCTTCAACAGCAAGGGGTGACGCAAGAACATGACTTTGATGAGTTGAGGTACCCTACCCCGCGATAA 1023 0.4673 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIRHGGFSEEEDNIICSLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQARRGSCPKQEMKRASGNAMVSDNENLNPYWPELPVPAPIPYPNEEPRFNDHSSIRRLLIRLGGRFSDDGQPLQNGTNLQLPIDISSVQQPFDHSVNFLSSSPMNALNNPRSEFPNAEYNMEGGGLHMLQGQNSFLAELEEMACSNPQRLDGLEFLYAQDMANNKPGSTAYEQSLSWGETSSLVYPPVASNYEGLQQQGVTQEHDFDELRYPTPR* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0660 340 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vvi18g0660 340 CDD SANT 71 113 IPR001005 -
Vvi18g0660 340 PANTHER OS09G0431300 PROTEIN 1 243 - -
Vvi18g0660 340 MobiDBLite consensus disorder prediction 319 340 - -
Vvi18g0660 340 FunFam Transcription factor RAX3 7 68 - -
Vvi18g0660 340 Gene3D - 70 142 - -
Vvi18g0660 340 FunFam Transcription factor RAX3 70 143 - -
Vvi18g0660 340 MobiDBLite consensus disorder prediction 118 142 - -
Vvi18g0660 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vvi18g0660 340 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vvi18g0660 340 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vvi18g0660 340 CDD SANT 16 62 IPR001005 -
Vvi18g0660 340 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vvi18g0660 340 Gene3D - 7 68 - -
Vvi18g0660 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vvi18g0660 340 SMART sant 13 64 IPR001005 -
Vvi18g0660 340 SMART sant 67 115 IPR001005 -
Vvi18g0660 340 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0660 Vvi-Chr18 6923821 6925097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0660 1 310 MYB Transcription Factor Family AT3G49690 49.226 1.53e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi18g0660 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0660 K09422 - vvi:100853539 701.819