Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0654 ATGGGTTTTGAAGATGTTTGTTGCACAGGCCTTGGTCTTGGTTTAGGCCGCCAGGATCGCCCTCAGAGTCGTTTGCAGTCCGATCATCAAGAGAAGAAGAAGAAGCTATGCTTGAAATATGATAACTCCTTCCCGTGTCTTACGCTAGGCCCATCGGAAGATACGTATCAATTGGCTGCAAAGATTAATGATGCTGGTAAAGGGTATGGTGAATCAACCGATTTGCACAGACAGGCCTCTTCTCTTAGTGCAGTGTCATCATTTTCTAACTCTAGTATTAAAAAGGAGAGAGACTTATGTGGTGAGGTAGAGGTAGAGGTAGAAATAGAGAGAGTCTCTTCAAGGGCAAGTGATGAAGACGAAGAGGGTAATTCGAGGAAGAAACTTAGACTTACCAAGGAACAAGCTGTCATTTTAGAAGACAGCTTCAAACAACACAGCACTCTCAATCCTAGACAAAAGCAAGTCTTAGCCAAACAGTTGAATCTTCGGCCACGACAAGTAGAAGTGTGGTTCCAAAACAGGAGGGCCAGGACAAAGCTGAAGCAAACTGAAGTGGACTGCGAGTTGTTGAGAAAGCGTTGCGAAACACTGACAGATGAGAATCAAAGGCTGCAGAAGGAGCTGCAAGAGCTGAAAGCACTAAAACTAGCGACCCCTTTATATATGCAGCTGCCTGCAGCTACCCTAACCATGTGCCCTTCTTGTGAGAGAATTGGGAGTGGTGGCGACGCCTCGTCTAAGACTTCTTTCACGATCGGAGCAAAGCCTCGCTTCTGTAATCCCTTCACGCATCCATCTCCAGCTTGCTAG 813 0.4625 MGFEDVCCTGLGLGLGRQDRPQSRLQSDHQEKKKKLCLKYDNSFPCLTLGPSEDTYQLAAKINDAGKGYGESTDLHRQASSLSAVSSFSNSSIKKERDLCGEVEVEVEIERVSSRASDEDEEGNSRKKLRLTKEQAVILEDSFKQHSTLNPRQKQVLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLRKRCETLTDENQRLQKELQELKALKLATPLYMQLPAATLTMCPSCERIGSGGDASSKTSFTIGAKPRFCNPFTHPSPAC* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0654 270 Gene3D - 130 180 - -
Vvi18g0654 270 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Vvi18g0654 270 FunFam Homeobox-leucine zipper protein 18 110 187 - -
Vvi18g0654 270 Pfam Homeobox associated leucine zipper 182 216 IPR003106 GO:0006355|GO:0043565
Vvi18g0654 270 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 249 - -
Vvi18g0654 270 SMART halz 182 225 IPR003106 GO:0006355|GO:0043565
Vvi18g0654 270 SUPERFAMILY Homeodomain-like 124 191 IPR009057 -
Vvi18g0654 270 CDD homeodomain 126 183 IPR001356 GO:0003677
Vvi18g0654 270 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Vvi18g0654 270 SMART HOX_1 124 186 IPR001356 GO:0003677
Vvi18g0654 270 Coils Coil 174 218 - -
Vvi18g0654 270 Pfam Homeodomain 126 180 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0654 Vvi-Chr18 6882286 6883411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0654 1 270 Homeobox Transcription Factor Family AT4G37790 54.483 7.19e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi18g0654 Homeodomain 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0654 K09338 - vvi:100259040 501.901