Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0651 ATGGAGGATTATAATCAACTGGGGGAGAATACGACCTCTAGAGCTAGTTTCTTGTACACTTCTTCGGTTCTTGCACCGAATTCCTCAGTGTATGGGAGAACGAGCAGCGGCTCTAATGCGAATAATCAACAGACCCAGGTGCCCATCAACACCTTTCATCTTCAATCGGGCGAGTGTTTTCAATCTGAAGCACATCCGGTAGTGAAGACCGAAGCGAGCACTTCTCAACATGCTCAGAAATTTCACTACCCTATAATTAGAGGGCACCAAACAGTTGATCATCAGCAACAGCAACAAGGGAACGAAAGCTTCAGTGAAGTTGAAGCCATTAAAGCCAAGATCATCGCCCATCCTCAATATTCCAACCTTTTGGAAGCTTACATGGATTGTCAAAAGGTGGGAGCCCCACCCGAAGTAGTAGAGCGACTTGCGGCTGTTCGCCAGGAGTTCGAGTCACGGCAGCGATCTTCAGTCACTTGCAGAGATGCTTCAAAGGACCCAGAACTGGACCAGTTCATGGAAGCTTACTACGACATGCTGGTAAAATATCGGGAAGAACTAACAAGGCCACTACAAGAGGCAACGGATTTCATGCGTAGGATCGAATCACAGCTAAATATGCTTAGCAATGGTCCCGTGCGGATCTTCACCTCCGATGAGAAGTGCGAGGGTGTTGGTTCCTCAGAAGAGGATCAAGACAACAGTGGTGGGGAAACTGAACTTCCTGAGATTGATCCACGGGCGGAAGATAGAGAACTTAAGAACCACCTGTTGAGGAAGTATAGTGGTTACTTAAGTAGTCTCAAGCAAGAGCTTTCCAAGAAAAAGAAGAAAGGGAAACTACCCAAAGACGCCAGGCAGAAGCTACTCAATTGGTGGGAGTTACACTACAAATGGCCATACCCCTCAGAGACAGAGAAGGTGGCCTTGGCTGAAACTACTGGTTTGGACCAGAAACAAATTAATAATTGGTTCATAAACCAAAGGAAAAGACACTGGAAACCTTCTGAAGATATGCAATTCATGGTGATGGATGGCCTCCATCCCCAGAATGCAGCCCTCTATATGGAAAGTCACTATATGGGCGATGGTGCTTATCGTTTGGGGCCATGA 1113 0.4672 MEDYNQLGENTTSRASFLYTSSVLAPNSSVYGRTSSGSNANNQQTQVPINTFHLQSGECFQSEAHPVVKTEASTSQHAQKFHYPIIRGHQTVDHQQQQQGNESFSEVEAIKAKIIAHPQYSNLLEAYMDCQKVGAPPEVVERLAAVRQEFESRQRSSVTCRDASKDPELDQFMEAYYDMLVKYREELTRPLQEATDFMRRIESQLNMLSNGPVRIFTSDEKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAETTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAALYMESHYMGDGAYRLGP* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0651 370 SMART KNOX2_2 159 210 IPR005541 GO:0003677|GO:0005634
Vvi18g0651 370 ProSiteProfiles 'Homeobox' domain profile. 272 335 IPR001356 GO:0003677
Vvi18g0651 370 ProSiteProfiles ELK domain profile. 252 272 IPR005539 GO:0003677
Vvi18g0651 370 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 81 342 - -
Vvi18g0651 370 Pfam KNOX2 domain 164 208 IPR005541 GO:0003677|GO:0005634
Vvi18g0651 370 SMART KNOX1_2 108 152 IPR005540 GO:0003677|GO:0005634
Vvi18g0651 370 ProSitePatterns 'Homeobox' domain signature. 310 333 IPR017970 GO:0000981|GO:0006355
Vvi18g0651 370 Gene3D - 277 339 - -
Vvi18g0651 370 MobiDBLite consensus disorder prediction 219 249 - -
Vvi18g0651 370 CDD homeodomain 284 336 IPR001356 GO:0003677
Vvi18g0651 370 Pfam Homeobox KN domain 292 331 IPR008422 GO:0003677|GO:0006355
Vvi18g0651 370 SMART ELK_2 252 273 IPR005539 GO:0003677
Vvi18g0651 370 Pfam KNOX1 domain 109 151 IPR005540 GO:0003677|GO:0005634
Vvi18g0651 370 FunFam Homeobox protein knotted-1-like 2 277 339 - -
Vvi18g0651 370 SUPERFAMILY Homeodomain-like 273 347 IPR009057 -
Vvi18g0651 370 SMART HOX_1 274 339 IPR001356 GO:0003677
Vvi18g0651 370 Pfam ELK domain 252 273 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0651 Vvi-Chr18 6870779 6876270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0651 59 370 Homeobox Transcription Factor Family AT4G08150 69.659 3.71e-151 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vvi18g0651 KNOX2 2.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0651 - - vvi:100255834 724.161