Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0637 ATGCACCTCTCTATCACAATACCACTGCACGGACCTCCTTTTTCATCATCACGGTTTATTACTGCTGCACCCAATGATCCCCTCAATCATCATGTTTATATACCGCTTTTCTTCTTCACCCCCTCCTCTGCAATAACCACCTTAACAACAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGATGGCTCTTTCTTGTATTTTCTTCCTTTTTGTGTCACTTGTGTTTCTCTCCATGCCCTCACAAGCCAGCATAACTAACCAGTCTCACTTCTTCACTCTAATGAAGAACTCTCTCTCTGGGAACTCCTTGTCTGATTGGGATGTAACAGGAAAAACGTCTTACTGTAACTATAGTGGAGTGAGCTGCAACGATGAAGGGTATGTTGAAGTGATTGACATCTCTGGGTGGTCACTTTCTGGCCGTTTTCCACCAGACGTATGCTCTTACCTGCCCCAGCTGCGGGTTCTTCGTCTCAGCTACAACGACCTTCATGACAATTTTCCAGAGGGCATTGTCAACTGCTCTCTCCTGGAAGAGCTTGATATGAATGGTTCACAAGTCATTGGGACGCTGCCGGACCTGTCGCCAATGAAATCTCTCCGGATACTGGACCTGTCATACAACCTCTTCACAGGCGAGTTCCCTTTGTCCATAACCAACCTCACCAATCTTGAACATATACGCTTCAACGAAAATGAGGGTTTCAACCTATGGTCACTGCCAGAGGATATTTCCAGGTTGACAAAGCTCAAGAGTATGATCTTGACAACATGCATGGTACACGGCCAGATACCACCGTCCATAGGGAACATGACATCCCTGGTTGATCTTCAGCTGAGTGGGAACTTCCTCAACGGTCAGATTCCAGCAGAGCTTGGATTGCTGAAGAACTTGCGACTGCTTGAGCTTTATTACAACCAGATTGCTGGTAGAATACCCGAGGAGTTGGGGAATCTGACGGAGCTCAACGATTTAGATATGTCAGTGAACCGGTTGACTGGAAAAATTCCGGAATCCATATGTAAATTGCCCAAGCTCCGGGTCCTGCAGTTTTACAATAACAGCCTTACTGGAGAAATTCCGGAGGCAATTGGTAACTCAACAGCCTTGGCCATGTTATCAATTTACGACAACTTCCTGACAGGAGGAGTTCCAAGAAGTCTGGGACAATGGTCGCCTATGATTCTTTTAGACTTGTCAGAAAACCATCTATCTGGTGAATTGCCGACAGAGGTCTGCAAGGGAGGTAACCTGCTCTATTTTCTTGTCCTGGATAATATGTTTTCTGGAAAGTTACCTGAGAACTATGCAAAATGCGAGTCTCTTTTACGGTTTAGAGTGAGCAATAACCGTTTGGAGGGTCCAATCCCCGAGGGGCTTCTTGGTCTTCCCCGCGTTTCAATCCTTGATTTAGGTTTCAACAATTTGAATGGTCAAATTGGCAAAACAATTGGAACTGCTAGAAACTTGTCAGAATTGTTCATTCAGAGCAACAGGATTTCTGGTGCTCTACCCCCTGAAATATCTCAAGCTACCAATTTGGTGAAGATTGATCTCAGTAACAATCTCTTGTCTGGTCCAATACCTTCAGAAATTGGAAATCTAAATAAGCTAAATCTTTTGCTGTTGCAAGGCAACAAGTTCAATTCTGCCATTCCCAAGTCACTATCTTCATTGAAATCTGTAAATGTCCTTGATCTCTCCAACAATCGCTTGACAGGGAAAATCCCAGAAAGCCTCTCTGAATTGTTGCCAAACTCCATCAACTTTACAAACAACCTGCTTTCTGGTCCAATTCCTCTCTCACTGATACAAGGAGGGTTGGCAGAAAGCTTTTCAGGCAACCCACATCTCTGTGTTTCGGTCTATGTTAATTCCTCAGATTCGAATTTCCCCATATGTTCTCAAACCGACAACCGAAAGAAGCTAAATTGTATCTGGGTCATTGGGGCTTCTTCAGTGATTGTTATTGTTGGAGTTGTCTTGTTTCTAAAGCGTTGGTTCAGCAAACAAAGAGCTGTGATGGAACATGATGAGAACATGTCTTCATCATTCTTCTCTTATGCCGTAAAGAGCTTTCATCGAATCAATTTTGATCCACGTGAGATCATTGAGGCCTTGATTGATAAGAACATAGTCGGGCACGGAGGATCTGGCACAGTGTACAAAATTGAACTGAGCAATGGGGAAGTTGTCGCTGTGAAGAAGCTGTGGAGTCAAAAAACAAAAGATTCTGCTTCAGAGGATCAGCTGTTTTTAGTCAAAGAATTAAAAACCGAAGTCGAGACTCTAGGAAGCATAAGGCACAAAAACATTGTCAAGTTGTATAGCTGCTTCTCAAGTTCGGATAGCAGCTTGTTGGTATATGAGTACATGCCCAATGGAAACCTTTGGGATGCCCTTCACAGAGGAAGGACCCTTTTGGATTGGCCCATTCGTCATCGGATTGCTCTAGGGATTGCACAGGGTTTGGCCTATCTTCATCATGATCTGTTGCCACCTATAATTCACAGAGATATCAAGTCAACCAACATTCTCCTGGATATCAATTACCAACCCAAAGTTGCAGACTTCGGCATAGCCAAGGTCTTGCAAGCAAGAGGGAAAGATTTCACTACTACTGTTATTGCAGGGACTTATGGTTACTTGGCCCCAGAATATGCATATTCATCCAAGGCGACCACCAAGTGTGACGTGTACAGTTTTGGAGTAGTACTCATGGAACTAATAACTGGGAAGAAGCCAGTAGAGGCAGAGTTTGGGGAGAACAAGAATATCATATATTGGGTTGCAACCAAAGTGGGTACGATGGAAGGAGCTATGGAGGTTCTAGACAAGCGCTTATCAGGGTCCTTCAGAGACGAGATGCTTCAGATGCTGCGGATTGGCCTCCGCTGCACGAGTAGCAGCCCGGCCCTTCGCCCAACTATGAATGAGGTTGCCCAGTTGTTGACTGAGGCGGACCCATGCAGAGTCGATTCTTGCAAGTTGTCATGCAAGACCAAAGAGACGTCCAATGTCACCAAGACAAAGAACCCATTTGAATTATGA 3054 0.447 MHLSITIPLHGPPFSSSRFITAAPNDPLNHHVYIPLFFFTPSSAITTLTTASLSLSLSLSPMALSCIFFLFVSLVFLSMPSQASITNQSHFFTLMKNSLSGNSLSDWDVTGKTSYCNYSGVSCNDEGYVEVIDISGWSLSGRFPPDVCSYLPQLRVLRLSYNDLHDNFPEGIVNCSLLEELDMNGSQVIGTLPDLSPMKSLRILDLSYNLFTGEFPLSITNLTNLEHIRFNENEGFNLWSLPEDISRLTKLKSMILTTCMVHGQIPPSIGNMTSLVDLQLSGNFLNGQIPAELGLLKNLRLLELYYNQIAGRIPEELGNLTELNDLDMSVNRLTGKIPESICKLPKLRVLQFYNNSLTGEIPEAIGNSTALAMLSIYDNFLTGGVPRSLGQWSPMILLDLSENHLSGELPTEVCKGGNLLYFLVLDNMFSGKLPENYAKCESLLRFRVSNNRLEGPIPEGLLGLPRVSILDLGFNNLNGQIGKTIGTARNLSELFIQSNRISGALPPEISQATNLVKIDLSNNLLSGPIPSEIGNLNKLNLLLLQGNKFNSAIPKSLSSLKSVNVLDLSNNRLTGKIPESLSELLPNSINFTNNLLSGPIPLSLIQGGLAESFSGNPHLCVSVYVNSSDSNFPICSQTDNRKKLNCIWVIGASSVIVIVGVVLFLKRWFSKQRAVMEHDENMSSSFFSYAVKSFHRINFDPREIIEALIDKNIVGHGGSGTVYKIELSNGEVVAVKKLWSQKTKDSASEDQLFLVKELKTEVETLGSIRHKNIVKLYSCFSSSDSSLLVYEYMPNGNLWDALHRGRTLLDWPIRHRIALGIAQGLAYLHHDLLPPIIHRDIKSTNILLDINYQPKVADFGIAKVLQARGKDFTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGKKPVEAEFGENKNIIYWVATKVGTMEGAMEVLDKRLSGSFRDEMLQMLRIGLRCTSSSPALRPTMNEVAQLLTEADPCRVDSCKLSCKTKETSNVTKTKNPFEL* 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0637 1017 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 86 238 - -
Vvi18g0637 1017 SUPERFAMILY RNI-like 278 604 - -
Vvi18g0637 1017 Gene3D Ribonuclease Inhibitor 350 631 IPR032675 -
Vvi18g0637 1017 SMART serkin_6 708 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0637 1017 Gene3D Phosphorylase Kinase; domain 1 692 792 - -
Vvi18g0637 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 836 848 IPR008271 GO:0004672|GO:0006468
Vvi18g0637 1017 SMART LRR_typ_2 560 584 IPR003591 -
Vvi18g0637 1017 SMART LRR_typ_2 296 320 IPR003591 -
Vvi18g0637 1017 SMART LRR_typ_2 151 175 IPR003591 -
Vvi18g0637 1017 SMART LRR_typ_2 344 368 IPR003591 -
Vvi18g0637 1017 SMART LRR_typ_2 222 248 IPR003591 -
Vvi18g0637 1017 SMART LRR_sd22_2 198 227 - -
Vvi18g0637 1017 SMART LRR_sd22_2 560 583 - -
Vvi18g0637 1017 SMART LRR_sd22_2 320 346 - -
Vvi18g0637 1017 SMART LRR_sd22_2 296 319 - -
Vvi18g0637 1017 SMART LRR_sd22_2 512 538 - -
Vvi18g0637 1017 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 793 1003 - -
Vvi18g0637 1017 Pfam Protein kinase domain 711 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0637 1017 SUPERFAMILY Protein kinase-like (PK-like) 695 985 IPR011009 -
Vvi18g0637 1017 SUPERFAMILY L domain-like 114 363 - -
Vvi18g0637 1017 FunFam Receptor protein-tyrosine kinase CEPR1 344 629 - -
Vvi18g0637 1017 Gene3D Ribonuclease Inhibitor 85 236 IPR032675 -
Vvi18g0637 1017 FunFam Leucine-rich repeat receptor-like protein kinase 239 340 - -
Vvi18g0637 1017 ProSiteProfiles Protein kinase domain profile. 708 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0637 1017 FunFam receptor protein-tyrosine kinase CEPR1 691 792 - -
Vvi18g0637 1017 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 70 273 - -
Vvi18g0637 1017 CDD STKc_IRAK 714 987 - -
Vvi18g0637 1017 Gene3D Ribonuclease Inhibitor 237 340 IPR032675 -
Vvi18g0637 1017 Gene3D Transferase(Phosphotransferase) domain 1 793 1005 - -
Vvi18g0637 1017 ProSitePatterns Protein kinases ATP-binding region signature. 714 737 IPR017441 GO:0005524
Vvi18g0637 1017 Pfam Leucine rich repeat N-terminal domain 94 124 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0637 Vvi-Chr18 6730062 6733229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0637 84 990 Receptor kinase-like Gene Family AT5G49660 67.215 0.0 1244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi18g0637 Pkinase 4.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0637 - - vvi:100257433 1845.48