Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0636 ATGTCGGCGTCAAATGCTTTCCGGTGGAACCTTTGCTTGCTGTGCCTGCTATGTTTGGTCTGCTTGCCCTCCGGCGTCACATCCGACGAGATTCAACTTTTACTCAAAGTGAAAGCAGAGCTTCAGAATTTCGACACCTACGTGTTCGATTCCTGGGAATCGAATGATTCCGCATGCAATTTCAGGGGAATCACTTGCAATTCGGATGGTAGGGTCAGGGAAATCGAACTCTCCAATCAGCGGCTATCGGGAGTTGTTCCTCTTGAATCAATATGCCAGCTTGAGTCATTGGAGAAGCTGTCACTGGGGTTCAACTTTTTGCAGGGAACCATTTCCGGGGATTTGAACAAGTGCGTTGGATTACAGTATCTGGACCTGGGCAATAATTTATTTACGGGTCCTCTTCCAGATTTCTCTTCCTTGAGTGGATTGAAGCATCTGTACCTCAATAGCAGTGGATTTTCGGGTCTCTTTCCATGGAAATCTCTTCAAAACATGTCCGGTCTAATTTCGCTAAGCCTCGGCGACAATCCATTCCAGCCGAGTCCTATCGCAGAGGAGGTTTTTAAGCTTTATGATTTGAATTGGCTTTATCTCTCGAATTGCAGTATCAACGGAACACTTCCGCCTGAAATTGGAAATCTCAACAAGCTCATAAATTTAGAGCTCTCTGATAATTACTTATCCGGTGAGATTCCAGCAGAGATTGGGAAGCTCAGCAAGCTGTGGCAGCTGGAGCTTTACGCTAACGAATTGACAGGGAAAATCCCTGTTGGATTTCGGAATCTCACCAATCTCGAGAACTTTGATGCTTCCGATAACAACCTAGAGGGCGACCTATCGGAGTTGAGGTTCTTGAATCAACTAGTTTCGCTGCAACTCTTCGAGAACTCATTTTCTGGACAAATACCGGAGGAGTTCGGAGAGTTTAGGCGACTGGTGAACCTATCACTCTTCTCCAACAAGCTCTCCGGTCCTATCCCTCAGAAGCTTGGTTCTTGGGCAGACTTTGATTACATTGACGTGTCTGAGAATTCCTTAACGGGTCCAATTCCGCCGGATATGTGCAAGAATGGGAAGATGAAGGAGCTTCTGATGCTTCAGAACAAGTTTACGGGTGAGATTCCAGTGACTTACGCCAGCTGTTCCACATTAACTCGTTTCCGGGTAAACAACAACTCGCTTTCAGGCACAGTTCCTGCCGGAATATGGGGATTGCCCAATGTAAATATAATTGACATCACGATGAACGCGTTTGAAGGTTCCATTACTTCCGATATTGCAAAAGCAAAATCTCTCGGACAACTCTTCGTGGGAAACAATAGGTTGTCTGGGGAATTGCCAGTGGAGATTTCAAAAGCTTCATCATTGGTGTCAATTGATCTGAGCAACAATCAATTCTCCAGAGAAATTCCGGCTACCATCGGTGAACTAAAAAACCTGGGTAGTCTCCATTTACAAAACAACATGTTCTCTGGTTCAATACCAAAGGAGTTGGGCTCTTGCGACTCTCTCAGTGATCTGAACATTGCTCACAATTTACTTTCCGGCAAAATTCCATCTTCACTCGGATCTCTACCTACTCTCAATTCTTTGAATTTGTCCGAAAACCAACTCTCCGGTGAAATTCCGGCAAGTTTGTCATCTCTCAGGCTGAGCCTTCTCGACCTGTCCCACAATCGGTTAACTGGACGCGTGCCTCAATCTCTTTCCATAGAGGCCTACAACGGCAGCTTCGCGGGAAATGCTGGCCTCTGCAGCCCCAATATCAGTTTCTTCCGGCGGTGTCCACCGGATTCCCGCATATCGAGGGAGCAGCGGACGCTCATAGTTTGTTTCATCATAGGTTCAATGGTCTTGCTGGGCTCGCTGGCAGGCTTCTTTTTCTTGAAGAGTAAAGAAAAAGATGACCGGTCGTTGAAGGACGATTCTTGGGATGTGAAATCATTCCATATGTTGAGTTTCACAGAAGATGAGATTCTCAATTCGATTAAGCAGGAGAATCTCATCGGAAAAGGCGGTTGCGGAAATGTGTACAAAGTGTCACTATCAAACGGCAATGAACTTGCAGTGAAACACATCTGGAATTCAGACTCCGGCGGAAGGAAAAAGACCCGGAGTACCACGCCCATGCTGGCAAAGCGTAGCGGAAAGTCGTCGGAGTTTGACGCGGAGGTTCAGACGCTGAGCTCTATTAGGCATGTGAACGTGGTGAAGCTGTACTGTAGCATTACGAGTGAGGATTCAAGCCTATTGGTGTACGAGTATCTACCAAATGGGAGTCTGTGGGATCGTCTCCACACTTCCAGGAAGATGGAGCTTGATTGGGAGACAAGGTACGAGATTGCATTGGGGGCTGCCAAAGGATTAGAATATCTACACCATAGCTGTGAAAGGCCTGTGATTCATAGGGATGTCAAGTCTAGTAACATTCTGTTGGATGAGTTTTTGAAGCCTAGAATTGCTGATTTTGGGCTCGCCAAAATCGTTCAAGCTAATGGTGGTGGTAAGGACTCCACCCATGTCATTGCTGGAACCCACGGCTACATCGCTCCTGAGTATGGTTACACATATAAAGTAAATGAGAAGAGTGATGTATACAGTTTTGGAGTTGTTTTAATGGAGCTGGTGACTGGGAAAAGGCCAATTGAGCCTGACTATGGAGAGAACAGGGACATAGTGAGCTGGGTGTGCAGCAACATCAAGACTAGAGAGAGTGTGCTAAGTATCGTAGATTCAAGAATTCCAGAAGCACTCAAGGAAGATGCAGTGAAGGTATTGAGAATTGCAATTCTCTGTACGGCAAGGCTTCCAGCGCTGAGACCTACAATGAGGGGCGTGGTTCAAATGATAGAAGAAGCAGAGCCTTGTAGACTGGTTGGCATCATTGTCAATAAGGACGGTGTTACTAAGAAAATGGAAGGCAAAACAGAGAAATTCAATCCAAGCCCCTAA 2955 0.4613 MSASNAFRWNLCLLCLLCLVCLPSGVTSDEIQLLLKVKAELQNFDTYVFDSWESNDSACNFRGITCNSDGRVREIELSNQRLSGVVPLESICQLESLEKLSLGFNFLQGTISGDLNKCVGLQYLDLGNNLFTGPLPDFSSLSGLKHLYLNSSGFSGLFPWKSLQNMSGLISLSLGDNPFQPSPIAEEVFKLYDLNWLYLSNCSINGTLPPEIGNLNKLINLELSDNYLSGEIPAEIGKLSKLWQLELYANELTGKIPVGFRNLTNLENFDASDNNLEGDLSELRFLNQLVSLQLFENSFSGQIPEEFGEFRRLVNLSLFSNKLSGPIPQKLGSWADFDYIDVSENSLTGPIPPDMCKNGKMKELLMLQNKFTGEIPVTYASCSTLTRFRVNNNSLSGTVPAGIWGLPNVNIIDITMNAFEGSITSDIAKAKSLGQLFVGNNRLSGELPVEISKASSLVSIDLSNNQFSREIPATIGELKNLGSLHLQNNMFSGSIPKELGSCDSLSDLNIAHNLLSGKIPSSLGSLPTLNSLNLSENQLSGEIPASLSSLRLSLLDLSHNRLTGRVPQSLSIEAYNGSFAGNAGLCSPNISFFRRCPPDSRISREQRTLIVCFIIGSMVLLGSLAGFFFLKSKEKDDRSLKDDSWDVKSFHMLSFTEDEILNSIKQENLIGKGGCGNVYKVSLSNGNELAVKHIWNSDSGGRKKTRSTTPMLAKRSGKSSEFDAEVQTLSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDRLHTSRKMELDWETRYEIALGAAKGLEYLHHSCERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVQANGGGKDSTHVIAGTHGYIAPEYGYTYKVNEKSDVYSFGVVLMELVTGKRPIEPDYGENRDIVSWVCSNIKTRESVLSIVDSRIPEALKEDAVKVLRIAILCTARLPALRPTMRGVVQMIEEAEPCRLVGIIVNKDGVTKKMEGKTEKFNPSP* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0636 984 ProSiteProfiles Protein kinase domain profile. 664 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0636 984 Gene3D Phosphorylase Kinase; domain 1 647 756 - -
Vvi18g0636 984 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 20 950 - -
Vvi18g0636 984 FunFam Leucine-rich receptor-like protein kinase family protein 283 379 - -
Vvi18g0636 984 Gene3D Ribonuclease Inhibitor 472 596 IPR032675 -
Vvi18g0636 984 Gene3D Ribonuclease Inhibitor 283 379 IPR032675 -
Vvi18g0636 984 Gene3D Ribonuclease Inhibitor 380 471 IPR032675 -
Vvi18g0636 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 801 813 IPR008271 GO:0004672|GO:0006468
Vvi18g0636 984 SMART serkin_6 664 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0636 984 FunFam Leucine-rich receptor-like protein kinase family protein 186 282 - -
Vvi18g0636 984 FunFam Receptor-like protein kinase HAIKU2 647 756 - -
Vvi18g0636 984 Pfam Protein kinase domain 666 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0636 984 Gene3D Ribonuclease Inhibitor 26 185 IPR032675 -
Vvi18g0636 984 FunFam Receptor protein-tyrosine kinase CEPR2 473 595 - -
Vvi18g0636 984 Gene3D Ribonuclease Inhibitor 186 282 IPR032675 -
Vvi18g0636 984 SUPERFAMILY L domain-like 25 233 - -
Vvi18g0636 984 FunFam Probable inactive receptor kinase RLK902 27 185 - -
Vvi18g0636 984 Gene3D Transferase(Phosphotransferase) domain 1 757 960 - -
Vvi18g0636 984 FunFam Inactive leucine-rich repeat receptor-like protein kinase 380 472 - -
Vvi18g0636 984 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 757 966 - -
Vvi18g0636 984 SUPERFAMILY L domain-like 168 441 - -
Vvi18g0636 984 SUPERFAMILY L domain-like 369 592 - -
Vvi18g0636 984 SUPERFAMILY Protein kinase-like (PK-like) 655 951 IPR011009 -
Vvi18g0636 984 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0636 Vvi-Chr18 6719603 6722722 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0636 22 974 Receptor kinase-like Gene Family AT1G09970 64.301 0.0 1210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi18g0636 Pkinase 2.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0636 - - vvi:109121676 1924.83