Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0624 ATGGAAAATTTAGGACTTCTGGGTGCCCAAACCGGTTATAAAGGAATTGGAGTTCTTTTTAATGTGATGTCTCCACCACTGCTTGGTGTTGGGGAGGAGGAAGGCCAGAGTAATGTCACAATATTGGCTTCTTCAGCCTCCATGGAAAGTGTATGCCAGATCAGCTCAGGATTGAAAGAGCGGAATTACATGGGATTGTCTGAATGTTCTTCTGTGGATAGCTCTGCAATCTCCACTGATTCAGATGGCAATAAGAGCAGTCTGAATCTAAAAGCTACAGAGCTGAGGCTTGGGCTTCCTGGATCCCTGTCTCCTGGAAGAGAACCAGAGCTTTGCCTGCTGAGCTCCACTAAGCTTGATGAGAAACCCCTTTTCCCTCTGCATCCTTCAAAGGATCTTACTTACACTTCATCACAGAAGACTGTTGTTTCAGGAAACAAAAGAGGGTTTGCTGATGCAATGAATGGTTTCTCAGAGGGGAAATTTCTTGCAAACTCAGAGGTGAATGTGATGCTATCACCTAGGCCTTCCCCAAACAAGGAGAACCTAGGGTCTCAGCCAGCCAAGATGAAAGAGATGGCATCACCAAAGATCGTGCAGGAGAGACCTCGTGCCACCAATGAGACCCCTCCTAACCATACTGGTACTGGAAACAATAACAGCAGTGCACCTGCTACCAAGGCACAGGTTGTGGGTTGGCCACCTATAAGATCTTTTAGGAAGAACACGCTGGCCACCACTTCAAAGAACACTGAAGTAGACGGAAAAGCAGGGCCTGGTGCTCTATTTGTCAAAGTCAGTATGGATGGTGCTCCTTATTTGAGGAAAGTAGACTTGAGAAATTACTCTGCATATCAGGAACTGTCTTCTGCTCTCGAGAAGATGTTCAGCTGTTTTACCATAGGTCAATATGGATCACATGGAGCTCCCGGCAGGGAGATGCTGAGTGAGAGCAAATTGAAGGATCTACTACATGGATCAGAATATGTTCTCACTTATGAGGATAAGGATGGTGACTGGATGCTTGTGGGTGATGTGCCCTGGCAGATGTTTATTGAGACATGCAAGCGGCTGAGGATCATGAAGAGCTGTGATGCCATTGGTCTAGGGCTGTGGAGAAATGCAAGAACAGGAACTAGCTTGCCTCTACACATGGTTGTTGCCATCCATCCAGCAGGCCTAGGGGAGGGTGGAAATGCAAAAGCCAGATTTTGGTGGAAGTGTAGGAACTAA 1233 0.468 MENLGLLGAQTGYKGIGVLFNVMSPPLLGVGEEEGQSNVTILASSASMESVCQISSGLKERNYMGLSECSSVDSSAISTDSDGNKSSLNLKATELRLGLPGSLSPGREPELCLLSSTKLDEKPLFPLHPSKDLTYTSSQKTVVSGNKRGFADAMNGFSEGKFLANSEVNVMLSPRPSPNKENLGSQPAKMKEMASPKIVQERPRATNETPPNHTGTGNNNSSAPATKAQVVGWPPIRSFRKNTLATTSKNTEVDGKAGPGALFVKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGSHGAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWQMFIETCKRLRIMKSCDAIGLGLWRNARTGTSLPLHMVVAIHPAGLGEGGNAKARFWWKCRN* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0624 410 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 88 367 IPR003311 GO:0005634|GO:0006355
Vvi18g0624 410 FunFam Auxin-responsive protein 256 373 - -
Vvi18g0624 410 Gene3D - 256 374 - -
Vvi18g0624 410 ProSiteProfiles PB1 domain profile. 261 363 IPR000270 GO:0005515
Vvi18g0624 410 Pfam AUX/IAA family 93 370 IPR033389 -
Vvi18g0624 410 MobiDBLite consensus disorder prediction 205 226 - -
Vvi18g0624 410 SUPERFAMILY CAD & PB1 domains 259 362 - -
Vvi18g0624 410 MobiDBLite consensus disorder prediction 172 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0624 Vvi-Chr18 6527840 6532041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0624 275 371 B3 DNA Binding Superfamily AT1G19220 29.897 2.34e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vvi18g0624 AUX_IAA 1.4e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0624 K14484 - vvi:100232909 665.996