Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0620 ATGAATGAGTTCTTCTCACATGGCTGGGGTTTTGATTATCGTTTTGATGAAAACCCAGTTACTTTTCTTCCAAACTCTTCCTTCGAAGCATTCTCCGGACCTATTGAACCAGGGTTCGGTTACTCATTCAATGAAATGTACAGTCCATTTGGAGATGAATTCTCCACACCCCAGGTTACCGATTCCTCCTACACCAAGCAAGATACACCCCCATTTCCAACTCAAGAAGATTATCCATTTCCGATGATGGAGGAGGAGGAACCTGCAGTTCACCCTGGGGTCGATCTCCACAACATGGGGCTTCAAGCTACTTGTAAAGTGGAGCCAATTCAATCCACTGAATTTCCAGTTTTCAACGTGGGCGTATGTAACGAGGTAAAGAATAAGCGGACCAAGAAGGTGGAAGGGCAACCTTCCAAGAATCTAATGGCTGAGAGAAGGCGCAGGAAGCGATTGAATGACCGGCTTTCAATGCTAAGATCTGTTGTTCCCAAAATTAGCAAGATGGACAGGACATCTATACTTGGAGATACCATAGATTACATGAAAGAGCTATTAGAGAGAATCAACAATCTGCAGGAAGAAAATGAAGTGGACTCCAGTCAGTTGAACTTGCTGGGCATATTCAAGGACTTAAAACCAAATGAAATCATGGTCAGAAATTCGCCTAAGTTTGATGTGGAAAGAAGAAACATGGATACCCGGATAGAAATTTGCTGTGCAGGGAAGCCAGGATTGTTACTATCTACAGTAAATACCCTGGAAGCATTAGGACTTGAGATTCAACAGTGTGTTATTAGTTGTTTCAATGATTTCTCAATGCAAGCTTCTTGCTCAGAGGAATTGGAGAAGAGAACAATGGTAAGTTCTGAGGAACTAAAGCAAACATTATTTAGAAATGCAGGGTATGGAGGAAGGTGTCTGTAG 927 0.4239 MNEFFSHGWGFDYRFDENPVTFLPNSSFEAFSGPIEPGFGYSFNEMYSPFGDEFSTPQVTDSSYTKQDTPPFPTQEDYPFPMMEEEEPAVHPGVDLHNMGLQATCKVEPIQSTEFPVFNVGVCNEVKNKRTKKVEGQPSKNLMAERRRRKRLNDRLSMLRSVVPKISKMDRTSILGDTIDYMKELLERINNLQEENEVDSSQLNLLGIFKDLKPNEIMVRNSPKFDVERRNMDTRIEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEELEKRTMVSSEELKQTLFRNAGYGGRCL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0620 308 Coils Coil 175 202 - -
Vvi18g0620 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Vvi18g0620 308 Pfam Helix-loop-helix DNA-binding domain 142 185 IPR011598 GO:0046983
Vvi18g0620 308 CDD ACT_UUR-ACR-like 234 275 - -
Vvi18g0620 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 204 IPR036638 GO:0046983
Vvi18g0620 308 MobiDBLite consensus disorder prediction 131 150 - -
Vvi18g0620 308 SMART finulus 142 191 IPR011598 GO:0046983
Vvi18g0620 308 Gene3D - 144 212 IPR036638 GO:0046983
Vvi18g0620 308 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 111 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0620 Vvi-Chr18 6502919 6504152 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0620 68 308 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 56.735 7.22e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi18g0620 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0620 - - vvi:100250635 626.706