Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0617 ATGGAGAATTACTACCCTTATCCAGATTCTCACGACTCCTCTCCACGGTCGCGAGAAATTGACACTGAAAATGCTTCATGGGACGAACCTCCTTCCAATTACAAGGTCAAGTTTATGTGCAGTTATGGAGGCAAGATCCATCCCAGGCCGCAGGACAACCAGCTTGCTTACGTTGGAGGTGAAACCAAGATCTTATCTGTGGATCGCAACATCAAATTCCCCGGATTCATGTCCAAGATTTCCTCGATCTGTGAGGGGGAAGTGTGCTTGAAGTATCAGTTACCCGGTGAAGATCTCGACGCTTTGATCTCGGTTACCAACGATGAGGATCTTGAACACATGATGCTCGAGTACGATCGATTGTGCCGCCCATCCAACAAGCAGGCCAGACTCAGGTTATTTCTCTTCCCGCTGACCCCTCCTGCATCCACCAGTTTCGGTTCCAACGAGACCAAATCGGAGCGGCAGTGGTTCGTGGACGCACTGAATTCTGTGCAGATCCAGCCTCTGGAAGGTTCTTCACCTCAGGCGGCGGCCTCCGAGACCAATCCGGATTTTCTGTTTGGGTTGGATAAAGGGCTCGCTCCGCCTCCCCCCGTGAAATTGCAGGATCCAACGCCTCCACCCACGGTTCCAGATGTGCTTCCCAAGGATTATTCAGTGAGATCGGATCCAGGATCGGAGGATCGCCATGTTGTTGGAGATCCAGTGGTGTCCCCCGCGGACTACCAGAGGCAGATCCAGGAATTGCAGAGGTTGCAGATTGCCAGCCAAGAGCAGGCGATGTTCCAAAGAAAAAACGATGAAAGCAACACGCGGGCTTATCCTGCAGAATACTATGCACAGAAGATTCCAGAAAAACTTGCACCGGCGCCACAGCAGATGCCGGTGTCAATTCCGGCTACTTACTGGCCAGAAAGGCACATGACGACGGGAGGTTACCCGGTTGCTGCTTCAACCGGAACAGAGCAATCCGTTTACCTAATACATACATCTGCCGGTGTGTATCAAACTCCTGGTTTACGACCGATGACAGGACAGCTAGCTCAGCCTTACTACGGAATGCAGAGAGTGGTATCTGACGTGTACCGGGAACCGCAAGTTTACAATGCCGCTCCACCACATCAGCAGCAAAAAGTAGGCGCGTATGGAGAAGGGATGGGAATGATGCGGCCTTCAGCGAGCGGTGTTGGAGTGACTGAGCAAGGATATGCGCAGGTTACCTATGACAGCACTGGGCGGCAGGTTTACTACACTACACCGGGAGGGGCGGCTCCCTCGTATCAGGCAGTGACAACGGCTGCTGCGCAAGGTGATGTTAGACAAGGAGGTGTGACGATCAATCAAGATGGCAAGGTTGTTGCCAAGACTAAAACCCCTCACTGCCCTGTCGGCAGTTGGGAGATGGTGGTGGCTGGTCTGGACGTTGGAAGCATCCTTCATGGTGAAATTGCTGTGAGCTTGTCACAAGTCTAA 1476 0.5257 MENYYPYPDSHDSSPRSREIDTENASWDEPPSNYKVKFMCSYGGKIHPRPQDNQLAYVGGETKILSVDRNIKFPGFMSKISSICEGEVCLKYQLPGEDLDALISVTNDEDLEHMMLEYDRLCRPSNKQARLRLFLFPLTPPASTSFGSNETKSERQWFVDALNSVQIQPLEGSSPQAAASETNPDFLFGLDKGLAPPPPVKLQDPTPPPTVPDVLPKDYSVRSDPGSEDRHVVGDPVVSPADYQRQIQELQRLQIASQEQAMFQRKNDESNTRAYPAEYYAQKIPEKLAPAPQQMPVSIPATYWPERHMTTGGYPVAASTGTEQSVYLIHTSAGVYQTPGLRPMTGQLAQPYYGMQRVVSDVYREPQVYNAAPPHQQQKVGAYGEGMGMMRPSASGVGVTEQGYAQVTYDSTGRQVYYTTPGGAAPSYQAVTTAAAQGDVRQGGVTINQDGKVVAKTKTPHCPVGSWEMVVAGLDVGSILHGEIAVSLSQV* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0617 491 PANTHER OS05G0427100 PROTEIN-RELATED 7 370 - -
Vvi18g0617 491 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 55 138 - -
Vvi18g0617 491 SMART PB1_new 50 138 IPR000270 GO:0005515
Vvi18g0617 491 MobiDBLite consensus disorder prediction 198 214 - -
Vvi18g0617 491 Pfam PB1 domain 52 137 IPR000270 GO:0005515
Vvi18g0617 491 MobiDBLite consensus disorder prediction 1 28 - -
Vvi18g0617 491 MobiDBLite consensus disorder prediction 171 235 - -
Vvi18g0617 491 Gene3D - 56 137 - -
Vvi18g0617 491 SUPERFAMILY CAD & PB1 domains 52 146 - -
Vvi18g0617 491 CDD PB1_UP2 39 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0617 Vvi-Chr18 6465042 6466844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0617 28 165 MAP Kinase Kinase Kinase AT5G57610 49.296 4.27e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0617 - - vvi:100255721 916.761