Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0615 ATGGTGGCGGTGCGGAAGGTTGGCAAGTATGAGGTGGGGAGGACGATCGGAGAAGGGACCTTCGCTAAGGTAAAGTTCGCGCAGAACACGGAGACCGGTGAGAGTGTGGCCATGAAAGTGCTCGATCGCAGCACCATCATCAAGCACAAGATGACCGACCAGATTAAGAGGGAGATATCTATAATGAAGCTTGTTAGACATCCATATGTTGTTCGTCTTCATGAGGTTCTAGCAAGCCGTACAAAAATATATATAATCTTGGAGTTCATCACAGGTGGCGAGTTGTTTGATAAAATAGTTCACCATGGCCGACTAAGTGAAAATGAATCTAGAAGTTACTTCCAACAGCTCATTGACGGTGTGGATTATTGCCACAGTAAGGGAGTCTACCACAGAGACTTAAAGCCTGAAAACCTTCTACTAGATTCCCAAGGAAATCTAAAGATTTCAGATTTTGGTCTCAGTGCGTTGCCTGCGCCGGGAGTTAGCCTCCTTAAGACAACTTGTGGTACTCCTAACTATGTAGCACCAGAGGTACTCAGTCACAAGGGTTATGATGGTGCTGTAGCAGATGTCTGGTCTTGTGGTGTCATCCTTTATGTTCTGATGGCTGGATATCTCCCGTTTGATGAGCTTGATTTAACCACTCTGTACAGTAAGATCGAGAGAGCAGAATTTTCATGCCCATCCTGGTTTCCAGTGGGAGCAAAATCCTTGATTCATAGAATTTTAGACCCAAATCCTGAAACTCGCATTCGAATTGAACAGATCAGGAGCGATGAGTGGTTTAGAAAGGGGTATGTTCCAGTCCGACTTCTTGAATATGAAGATGTTAACCTGGATGATGTAAACGCTGTGTTTGATGATCCTGAGGAACAACATGCTAATGATCAACATGGAAATGAGGACATGGGTCCTCTGATTCTTAATGCATTTGACCTAATAATTCTTTCTCAGGGCCTAAACCTTTCAGCTCTGTTTGAACGGGGAGAGGGCCCTGTAAAGCATCAAACACGTTTCGTTTCACAGAAACCACCAAGAGTTGTTCTATCAAGCATGGAAGTTGTTGCACAATCCATGGGTTTCAAGACACATATTCGCAATTATAAGATGAGGGTGGAAGGCATTTCAGCCAATAAGATGGAACATTTCTCAGTCATGTTGGAAATTTTTGAAGTTGCTCCCACATTTATTATGGTAGACATTCAGAAAGCAGCTGGAGATGCTGGTGAATACCAGAAGTTTTACAAGAACTTCTGCAGCAATCTGGAGGATATCATCTGGAAACCACTCAATGAATCAAGCAAATCAAGGATCACCAAGACGAAGAGTAAAAAGGGTTGA 1344 0.4338 MVAVRKVGKYEVGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMTDQIKREISIMKLVRHPYVVRLHEVLASRTKIYIILEFITGGELFDKIVHHGRLSENESRSYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSQGNLKISDFGLSALPAPGVSLLKTTCGTPNYVAPEVLSHKGYDGAVADVWSCGVILYVLMAGYLPFDELDLTTLYSKIERAEFSCPSWFPVGAKSLIHRILDPNPETRIRIEQIRSDEWFRKGYVPVRLLEYEDVNLDDVNAVFDDPEEQHANDQHGNEDMGPLILNAFDLIILSQGLNLSALFERGEGPVKHQTRFVSQKPPRVVLSSMEVVAQSMGFKTHIRNYKMRVEGISANKMEHFSVMLEIFEVAPTFIMVDIQKAAGDAGEYQKFYKNFCSNLEDIIWKPLNESSKSRITKTKSKKG* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0615 447 FunFam Non-specific serine/threonine protein kinase 303 429 - -
Vvi18g0615 447 ProSiteProfiles NAF domain profile. 304 328 IPR018451 GO:0007165
Vvi18g0615 447 CDD CIPK_C 310 425 - -
Vvi18g0615 447 FunFam Non-specific serine/threonine protein kinase 3 304 - -
Vvi18g0615 447 Pfam NAF domain 306 364 IPR004041 GO:0007165
Vvi18g0615 447 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 422 - -
Vvi18g0615 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vvi18g0615 447 SUPERFAMILY Protein kinase-like (PK-like) 7 280 IPR011009 -
Vvi18g0615 447 Gene3D Transferase(Phosphotransferase) domain 1 3 304 - -
Vvi18g0615 447 ProSitePatterns Protein kinases ATP-binding region signature. 16 48 IPR017441 GO:0005524
Vvi18g0615 447 ProSiteProfiles Protein kinase domain profile. 10 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0615 447 SMART serkin_6 10 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0615 447 Gene3D Kinase associated domain 1, KA1 305 429 - -
Vvi18g0615 447 FunFam Non-specific serine/threonine protein kinase 2 89 - -
Vvi18g0615 447 Pfam Protein kinase domain 10 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0615 Vvi-Chr18 6443344 6452311 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0615 2 389 CBL-interacting serine-threonine protein kinases AT4G24400 82.474 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vvi18g0615 Pkinase 2.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0615 - - vri:117907383 870.537