Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0606 ATGGGGAGAGGAAAGATCGTGATTCGGAGGATCGACAATTCCACTAGCAGGCAAGTGACGTTCTCGAAGCGGAGAAGCGGACTGCTGAAAAAGGCTAAGGAGCTGGCGATCTTGTGCGATGCCGAAGTAGGAGTGATAATCTTCTCCAGCACTGGAAAGCTCTATGATTACGCAAGCACCAGCATTAAATCAATAACTGAGCGCTATATCAAAGCAAAAGAGGAACACCAACAACTGGTTAACCCAACTTCAGAAGTCAAGTTCTGGCAACGGGAGGCAGCAATGTTGAGGCAACAACTGCAACACTTGCAAGAAAATCATCGGCAAATGATGGGCGAAGAGCTTTCTGGTTTGAGTGTCAAAGATTTGCAGAATTTGGAGAACCAATTGGAAATGAGTCTTCGAGGTGTCCGTATGAAAAAGGACCAAATTTTAATTGATGAAATACAGGAACTAAACCAAAAGGGAAACCTTCTTCACAACGAAAATGTGGAATTGTATAAGAAGGTTTATGGAACAAGGGAAGTGAATGGAACAAACAGAAATGCCTTCACAAATGGTTTAAGCATTGGAGAGGACTTGCATGTGCCCATCCATCTCCAGCTTTGCCAGCCACAGCAACAAAACTATGAGACGACACCAGCAAGAGCTACAAAACTGGGACTACAACTGCAATAG 678 0.441 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVIIFSSTGKLYDYASTSIKSITERYIKAKEEHQQLVNPTSEVKFWQREAAMLRQQLQHLQENHRQMMGEELSGLSVKDLQNLENQLEMSLRGVRMKKDQILIDEIQELNQKGNLLHNENVELYKKVYGTREVNGTNRNAFTNGLSIGEDLHVPIHLQLCQPQQQNYETTPARATKLGLQLQ* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0606 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi18g0606 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi18g0606 225 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi18g0606 225 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi18g0606 225 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vvi18g0606 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi18g0606 225 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Vvi18g0606 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi18g0606 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Vvi18g0606 225 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Vvi18g0606 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi18g0606 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi18g0606 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi18g0606 225 Coils Coil 86 113 - -
Vvi18g0606 225 Gene3D - 13 114 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0606 Vvi-Chr18 6351256 6376057 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0606 1 214 MADS-box Gene Family AT4G37940 63.889 3.70e-95 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi18g0606 K-box 1.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0606 K09264 - tcc:18591843 369.777