Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0602 ATGGCACGAAGTCAAAAAAGACGGGAACAATGCTTTCTCTCCAGTCCAAGAAACCCACTCCAAACACTTGTTAATAAACCCTCCCACACATTTCTCTCGACATATTCGCATTCCCAAACAGGTAAGACACGGAGAACAAGATTTTCTTCCAAATCCGTACTTCAACTTTTTATATATGAATATCTAACGGATCTTAATTTTTTTTTTCAGAAATCCACTGCTTCCTGGAGCCAGAATCCGGATTTTTGTTGTGCCCAATCCATGTCGCCTCTGGGAGTACAACTGTATATTCAAGATCGTCATGTGGTAATGGATAATGGCATCCTTCAAGTTACATTATCAAATCCAGGGGGAATTGTCACTGGGATCCGATATAGTGCCATTGACAATCTGCTTGAAGTTCTTAATGATGAAACTAACAGAGGTTACTGGGACCTTGTTTGGAGTGTACCAGGAAGTGCTGGAATCTTTGATGTGATTAAGGGAACAAATTTTAGGGTGATAGTGGAAAATGAAGAACAAGTAGAGATCTCATTCACAAGAATGTGGGATCCCTCACTTGAGGGCAAGTTGGTACCGTTGAATATAGATAAAAGGTTTATAATGCTTCGAGGTTCCTCAGGCTTCTACTCCTATGCCATTTATGAGCACTTAAAGGAATGGCCTGCTTTCACCCTTGCTGAAACTAGGATTGCATTCAAGCTCAGAAAAGACAAGTTTCACTACATGGCCATGGCAGATAACAGGCAACGGTTCATGCCCTTGCCAGACGATAGGTTACCAGGACGAGGCCAACCCTTGGCCTACCCAGAAGCAGTTTTACTTGTCAATCCTGTGGAGCCAGAATTCAAAGGAGAGGTGGATGACAAGTATCAATACTCTTGTGATAACAAAGATAACCGGGTCCATGGGTGGGTATGCCTTGAACCCCCAGTGGGGTTCTGGCAAATTACACCCAGTGATGAGTTTCGAACTGGTGGGCCCGTCAAACAGAATCTAACCTCACATGTGGGCCCTACAACCCTTGCAATGTTTCACAGTGCTCATTATGCGGGAGAGCCCCTGGTGCCCAAATTTGGACCTGACGAGCCATGGAAGAAAGTTTTTGGCCCAGTTTTTATCTATGTCAATTCTGTTTTTGGTGACGGTGACCCATTTTGGCTATGGGAAGATGCCAAGGAACAGATGACGATTGAAGTCCAAAGCTGGCCCTACAGCTTCCCAGCCTCAGAGGATTTTCCATCTTCAGATCAGCGGGGCAATGTTAGTGGCAGATTACTAGTCCAAGATGGGTATATCAGCGATGACTATATATTAGCAAGCTGTGCTTATGTCGGATTGGCGCCACCAGGAGATGTTGGATCATGGCAAAGAGAATGCAAGGACTACCAATTCTGGACCCAAGCCGACCTGGGAGGCTATTTCTGCATTAATGATATTCGACCCGGTGACTATAATCTTTACGCATGGGTCCCGGGTTTTATTGGGGATTATAAATTAGATGCTGTCATTACCATAACCCCAGGCTGTGATGTTTTTGTGGGTGATCTTCTATATGAGCCTCCAAGAGACGGACCTACATTGTGGGAAATAGGCATTCCTGATCGTTCTGCCGCAGAGTTCTACAGTCCTGATCCAAACCCAACTTATGTCAACAAACTATTTATCGGTCATCCTGACAGGTTTAGGCAGTATGGATTATGGGAAAGATATGCAGAATTATATCCTGATGGTGATTTAGTTTACACAATTGGTGTCAGTGACTATACTAAAGATTGGTTCTTTGCTCAGGTCACCAGGAAGAAGGATAACAACACATATCAAGGAACTACATGGCAAATTAAGTTCACACTCGACACCGTGGATCAGATCGGAACCTACAAGCTGAGAGTGGCAATTGCCTCAGCAACACTTTCCGAGTTGCAGGTCCGGGTCAATGATCCAAAAGCAAATCCTCCTCATTTTACAAGTGGGCTAATAGGGAGGGACAACACAATTGCGAGACATGGCATTCATGGGCTCTACTGGCTTTATAGTGTGAATGTACTGGGGAATCTGCTTGTGGAAGGTGAGAATACCATTTTCCTCACGCAGCCAAGGAGTACCAGCCCTTTCCAGGGGATCTTGTATGACTATATTCGTTTAGAAGGTCCTCCGTCTCCCAATTCCAATTCCAGCAAGAAGCTTGCTTGA 2193 0.446 MARSQKRREQCFLSSPRNPLQTLVNKPSHTFLSTYSHSQTGKTRRTRFSSKSVLQLFIYEYLTDLNFFFQKSTASWSQNPDFCCAQSMSPLGVQLYIQDRHVVMDNGILQVTLSNPGGIVTGIRYSAIDNLLEVLNDETNRGYWDLVWSVPGSAGIFDVIKGTNFRVIVENEEQVEISFTRMWDPSLEGKLVPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPAFTLAETRIAFKLRKDKFHYMAMADNRQRFMPLPDDRLPGRGQPLAYPEAVLLVNPVEPEFKGEVDDKYQYSCDNKDNRVHGWVCLEPPVGFWQITPSDEFRTGGPVKQNLTSHVGPTTLAMFHSAHYAGEPLVPKFGPDEPWKKVFGPVFIYVNSVFGDGDPFWLWEDAKEQMTIEVQSWPYSFPASEDFPSSDQRGNVSGRLLVQDGYISDDYILASCAYVGLAPPGDVGSWQRECKDYQFWTQADLGGYFCINDIRPGDYNLYAWVPGFIGDYKLDAVITITPGCDVFVGDLLYEPPRDGPTLWEIGIPDRSAAEFYSPDPNPTYVNKLFIGHPDRFRQYGLWERYAELYPDGDLVYTIGVSDYTKDWFFAQVTRKKDNNTYQGTTWQIKFTLDTVDQIGTYKLRVAIASATLSELQVRVNDPKANPPHFTSGLIGRDNTIARHGIHGLYWLYSVNVLGNLLVEGENTIFLTQPRSTSPFQGILYDYIRLEGPPSPNSNSSKKLA* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0602 730 Pfam Polysaccharide lyase family 4, domain III 527 715 IPR029411 -
Vvi18g0602 730 SUPERFAMILY Galactose-binding domain-like 524 716 IPR008979 -
Vvi18g0602 730 CDD RGL4_N 98 378 - -
Vvi18g0602 730 FunFam Rhamnogalacturonate lyase B 415 514 - -
Vvi18g0602 730 Pfam Rhamnogalacturonate lyase family 92 287 IPR010325 -
Vvi18g0602 730 Gene3D - 415 511 - -
Vvi18g0602 730 Pfam Polysaccharide lyase family 4, domain II 442 512 IPR029413 -
Vvi18g0602 730 CDD RGL4_C 529 716 - -
Vvi18g0602 730 Gene3D - 525 716 - -
Vvi18g0602 730 SUPERFAMILY Starch-binding domain-like 416 512 IPR013784 GO:0030246
Vvi18g0602 730 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 95 719 - -
Vvi18g0602 730 Gene3D - 100 369 IPR014718 GO:0030246
Vvi18g0602 730 CDD RGL4_M 418 517 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0602 Vvi-Chr18 6286878 6292348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0602 88 718 Polysaccharide Lyase AT1G09890 73.618 0.0 975
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0602 K18195 - vvi:100247189 1373.99