Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0590 ATGGCGATGGCCAATCCTCAACCTTTGCAGGCTCGCCCCTTTGAAGATCACATGCAAATCCCTATTCAGATCCACGACGACGACGCGGACTTCGAAGTCGATGGTGGTGCCTCTGCTCCTGCTGATGATGCTATGGACGACGTTGATGATGACCCCCATATCAATTCCATCAACCCTATCGACCATGCTGGAGTCGTCGTCGCTTCTCGGACTAGCGAGCTCACTCTTGCTTTCGAGGGAGAGGTTTATGTCTTCCCTGCTGTTACCCCTGAAAAGGTGCAAGCGGTCCTCTTGCTTTTGGGAGGGCGTGATATACCTACTGGTGTGCCTACTATTGAAGTGCCTTTTGATCAAAGTAACAGGGGTGTGGGTGACCTCCCGAAGCGCTCGAATCTTTCAAGAAGAATAGCCTCCCTAGTTAGGTTTCGTGAAAAAAGGAAGGAGAGATGCTTTGACAAGAAAATCAGATACACTGTGCGAAAAGAGGTTGCTCAAAGGATGCATCGTAAGAATGGTCAGTTCGCTTCATTGAAAGAAAGCTCGGGTCCTTCAAATTGGGATTCTGCACAAAGCCTTCAAGGAGACACCACACCTCGTCCGGAAACTGTTCTTCGAAGATGTCAACATTGTGGTGTTAGTGAAAATTCTACTCCTGCAATGCGTCGTGGGCCAGCTGGGCCAAGGACTCTATGTAATGCTTGTGGGCTTATGTGGGCAAACAAGGGAACATTGAGAGATCTGAGTAAGGGAGGAAGAAATCTTTCTTTGGACCAGATTGAACTGGGAACCCCAATTGATGTCAAACCTTCAATCATGGAAGGAGAAAATTTTTCTGGCAGCCAAGATGAGCATATAACTCCTGAAGATCCTTCTAAGGCTGTTGCTGAAAGGACTGATAATCCTTCTGTGAATGCAGATGAGGAAGTAATGAGCAGTGGTGTTTATCCTTCTAGTTTCACTGATCTACATGAAACTGCTGATGATCTTTCACACACACTGCCTATGGGTATTGTCCATTCCTCGGGCAACCTTGATGACCAGGAAACTCTGGTTGAGCTTGCTAATGCTTCAGAGACAGAAATGGACATTCCTGGTAACTTCGATTAG 1107 0.4706 MAMANPQPLQARPFEDHMQIPIQIHDDDADFEVDGGASAPADDAMDDVDDDPHINSINPIDHAGVVVASRTSELTLAFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVPFDQSNRGVGDLPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGPSNWDSAQSLQGDTTPRPETVLRRCQHCGVSENSTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSLDQIELGTPIDVKPSIMEGENFSGSQDEHITPEDPSKAVAERTDNPSVNADEEVMSSGVYPSSFTDLHETADDLSHTLPMGIVHSSGNLDDQETLVELANASETEMDIPGNFD* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0590 368 ProSiteProfiles CCT domain profile. 135 177 IPR010402 GO:0005515
Vvi18g0590 368 SMART tify_2 67 102 IPR010399 -
Vvi18g0590 368 ProSitePatterns GATA-type zinc finger domain. 207 234 IPR000679 GO:0006355|GO:0043565
Vvi18g0590 368 ProSiteProfiles GATA-type zinc finger domain profile. 201 249 IPR000679 GO:0006355|GO:0043565
Vvi18g0590 368 PANTHER GATA TRANSCRIPTION FACTOR 28 4 362 IPR045280 GO:0006355
Vvi18g0590 368 Gene3D - 203 254 IPR013088 GO:0006355|GO:0008270
Vvi18g0590 368 MobiDBLite consensus disorder prediction 174 198 - -
Vvi18g0590 368 ProSiteProfiles Tify domain profile. 67 102 IPR010399 -
Vvi18g0590 368 MobiDBLite consensus disorder prediction 169 200 - -
Vvi18g0590 368 Pfam tify domain 70 101 IPR010399 -
Vvi18g0590 368 Pfam GATA zinc finger 207 243 IPR000679 GO:0006355|GO:0043565
Vvi18g0590 368 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 251 - -
Vvi18g0590 368 Pfam CCT motif 135 176 IPR010402 GO:0005515
Vvi18g0590 368 SMART GATA_3 201 254 IPR000679 GO:0006355|GO:0043565
Vvi18g0590 368 MobiDBLite consensus disorder prediction 33 53 - -
Vvi18g0590 368 CDD ZnF_GATA 206 250 IPR000679 GO:0006355|GO:0043565
Vvi18g0590 368 MobiDBLite consensus disorder prediction 271 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0590 Vvi-Chr18 6060621 6094190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0590 26 260 Tify Gene Family AT1G51600 50.800 1.26e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vvi18g0590 CCT 1.4e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0590 - - vvi:100257426 723.005