Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0589 ATGTACGGTCACCCGCAACACATGAGCATGCACAACCAGATCGCCGGCGACGACGACGACGGCGCTGCTTCGGAGTCCATCGATAATCCTCATGTCCATTATGATGCCCACGTTCTCCAAGACGGAGTCGTCCCCGGCATGGAAGTCGCCGGAGACGTACCCTCCGACGCTGTGTACGTCGCCGATGGCTCCGAAGTCGCTCTTCAACCCAGCGACGCTACCAATCAGCTTACGCTCTCCTTCCGCGGCCAAGTTTATGTTTTTGATTCTGTTACGCATGAAAAGGTTCGATCTGTGCTATTACTTTTGGGGACACCAGAACTATCTTCCATTGCACATAATATGGAAATAGTACCTCAAAATCAGAGGGCTTTAACAGACTTCCCTGGACCATACAATCAACCTCATAGAGCAGCTTCTTTAAATAGGTTCCGTCAAAAGAGAAAAGAGCGGTGTTTTGATAAGAAAATTAGATATAATGTCCGCCAAGAAGTTGCACTCAGGATGCAGCGAAACAAGGGTCAATTTTCTTCGTCAAAGAAGTCTGAGGGAACTTTTAGCTGGGATTCTGTCCAGGATTCTGGACAAGATGAGAGCCCTCCTGAAACCTTATGTACACATTGTGGCACCAGTTCAAAGTCCACTCCAATGATGCGACGTGGGCCAACTGGTCCGAGGTCTCTCTGCAATGCATGTGGGCTTTTTTGGGCAAACAGGGGATCTTTGAGGGATCTTTCCAAGAAAAACCAGGATCATTCTCTGAACCAAATTGAGCGGGGTGATGGTGAAGCTAATGATTCTGACTGTGGAACTAGTGGATACATAAATAACAATCATGTTGCTTTCTCAAATAGTGATAACCCGGCTTTAATACCTGAGCAGTAA 885 0.4734 MYGHPQHMSMHNQIAGDDDDGAASESIDNPHVHYDAHVLQDGVVPGMEVAGDVPSDAVYVADGSEVALQPSDATNQLTLSFRGQVYVFDSVTHEKVRSVLLLLGTPELSSIAHNMEIVPQNQRALTDFPGPYNQPHRAASLNRFRQKRKERCFDKKIRYNVRQEVALRMQRNKGQFSSSKKSEGTFSWDSVQDSGQDESPPETLCTHCGTSSKSTPMMRRGPTGPRSLCNACGLFWANRGSLRDLSKKNQDHSLNQIERGDGEANDSDCGTSGYINNNHVAFSNSDNPALIPEQ* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0589 294 ProSitePatterns GATA-type zinc finger domain. 205 232 IPR000679 GO:0006355|GO:0043565
Vvi18g0589 294 ProSiteProfiles Tify domain profile. 70 105 IPR010399 -
Vvi18g0589 294 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 250 - -
Vvi18g0589 294 ProSiteProfiles GATA-type zinc finger domain profile. 199 259 IPR000679 GO:0006355|GO:0043565
Vvi18g0589 294 PANTHER GATA TRANSCRIPTION FACTOR 28 12 266 IPR045280 GO:0006355
Vvi18g0589 294 Pfam tify domain 72 104 IPR010399 -
Vvi18g0589 294 MobiDBLite consensus disorder prediction 171 218 - -
Vvi18g0589 294 Pfam CCT motif 137 178 IPR010402 GO:0005515
Vvi18g0589 294 Pfam GATA zinc finger 205 241 IPR000679 GO:0006355|GO:0043565
Vvi18g0589 294 SMART tify_2 70 105 IPR010399 -
Vvi18g0589 294 MobiDBLite consensus disorder prediction 171 222 - -
Vvi18g0589 294 Gene3D - 196 259 IPR013088 GO:0006355|GO:0008270
Vvi18g0589 294 MobiDBLite consensus disorder prediction 1 28 - -
Vvi18g0589 294 SMART GATA_3 199 252 IPR000679 GO:0006355|GO:0043565
Vvi18g0589 294 CDD ZnF_GATA 205 251 IPR000679 GO:0006355|GO:0043565
Vvi18g0589 294 ProSiteProfiles CCT domain profile. 137 179 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0589 Vvi-Chr18 6040264 6057791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0589 53 254 Tify Gene Family AT4G24470 57.212 5.04e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vvi18g0589 CCT 1.2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0589 - - vvi:100242037 594.349