Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0587 ATGCCTCACAGAACCACTTACTTCTTCCCCAGGCAGTTTCCCGACCGCAGATTCGATGCATCTTCCAAGGAGCTGCTGGCTCACGAGAAGAAGATTGGAGGCGAAAGTAACAGAAAAGGTACGAGAACAACCAAGGATGTGACTGCTGATAGGACTTACAATGCTTCTGATCTATTCACGGGAAGCGATAAGTTTCGGAGCAAGAAGCAACTCGCCGCTTTTTGTGACTGGTTGGTGGAGAAAAAGGGTGACAGATCGGGTCACGTGAGGTTGAGGTCGCGGAACGATGAAGGTGATCGCGACGTGTTGTTGCCTCCACCGCCAGCGCCGGTGCCGGAGGTGGTGGCAGGAAAGGACCAGCAGTTTGATCGGCAGGTGTCGTTGCCGAGGGTGTCGAGCGGTAGTAGCTATGCTGGGAGCCTGTTCTCTGGAACGACGGTGGAAGGGAACGTGTCGAGCGGTCTGAAGGATTCGCATACGAATTCGCATTCGCAGGAGTCGACGAGGCGAGAGGTGGATGAGGAGAAGGAGAGTGCGGCGCAGAAGTCAAGGGAGAGCTACTATTTGCAGCTCACGCTTGCTAAAAGACTCGCTTCTCAAGCGTCGTTGGCTTGTGAGCCTGTGCTCTTTTTACAAGAGAGTGGAGCGGAGGGAAATGCCGTCTCCTTCGATCCCGACGTTGTTTCCTATCGTCTTTGGGTTAGTGGGTGCTTGTCATATACTGACAAAATATCAGACGGGTTCTATAACATTCTGGGAATGAATCCGTATGTGTGGGTGATGTGCAATGAATTGGAGGAAGGTAGAAGGCTGCCACCTTTAATGGCGCTTAAAGCCGTAGAACCCAATGATACATCCATGGAGGTGGTTCTTGTTGATAGACGTGGAGACTCGCGCCTCAAGGAGCTTGAAGATAAAGCACATCAATTATACTGCGCTTCAGAGAATACCTTGGTGTTGGTGGAGCAACTTGGCAAGCTGGTTGCAATCTATATGGGGGGTAGTTTTCCGGTGGAGCAAGGTGATCTCCATAAGCAATGGAAATTGGTTAGCAAGAGATTGAGAGATTTTCAGAAGTGTATTGTGCTACCGATCGGCAGCCTATCAATGGGGCTCTGTAGGCATAGAGCAATTCTTTTCAAGAAATTGGCGGACTACATAGGTTTGCCTTGCCGGATAGCTCGAGGTTGCAAGTATTGTGTTGCCGATCATCGCTCTTCATGTCTTGTGAAAATTGATGACAAGCAGTCCTCAAGGGAATATGTAGTTGACCTAGTTGGGGAACCAGGAAATGTCCATGGTCCAGATTCCTCAATCACTGGAGGTTTACTTTCATCAATGCCTTCACCACTTCAAATTTCTCATCTTAAAGAATATCAACAGCCTTACATGGATAATGAATCATGTTGTCAAATTCAAAACTCAAAGAACACATGTATTTATCCCGAAGATCCTCTATATTTAGGCAATGAGAAAAACACCTTGTACACTCCAACTGATCAAATTTGTGAAAGAATGGAATCATCTGTGTTGCCTTTGGAGTTCAATGGGAACACTGATCGGTGCATAATTCAAAGTGCAATGTTGCAATCTGTCCAAAGCAATGTTTCTGAAGCTGTGGATGCTTCTGCTTCTGGGGTGTCTATACATGAATGTTTTAGAATTGCTGGAGAAAAGATTGTTATACAACAAGCTCACAAAAAAGAGATTGCTCTATCTGGAAGTCCGATTACGAGTAAGGCTCTCAAGCAGCCTAAAGTAAGCTTGTCTAGTAAATCAAATATCAAGGAGGTTGAAGGCAGACTTGAGAATCGAGGTAGATTCCATACTGTAACCATTCCAAGATACTTGAATCTTGAACCTTCTCTTGCAATGGACTGGCTAGAGATTTCATGGGATGAATTACATATCAAAGAGCGTGTTGGTGCTGGTTCATTTGGAACAGTGCATCGTGCTGAATGGCATGGATCGGATGTTGCTGTTAAAGTTCTAACTGTCCAGAATTTTCAGGATGATCAGTTGAAGGAGTTCCTAAGAGAGGTTGCAATAATGAAACGGGTCCGCCATCCGAATGTGGTACTCTTCATGGGTGCAGTAACAAAGCGTCCACATCTTTCAATTGTGACTGAATATCTGCCTAGGGGTAGTTTATATCGTCTAATTCATAGACCAACTTCAGCGGAAATTTTGGATCAAAGGAGGAGATTACGAATGGCCTTGGATGTGGCCAAGGGAATCAATTATCTACATTGCCTTAAACCTCCTATAGTTCATTGGGATCTTAAATCTCCCAATCTATTGGTGGATAAAAATTGGACAGTGAAGGTATGTGATTTTGGGTTATCCAGGTTCAAGGCAAACACTTTTCTCTCATCAAAATCTGTTGCTGGGACACCTGAGTGGATGGCCCCCGAGTTCCTACGTGGAGAGCCTTCAAATGAGAAGTCTGATGTTTACAGTTTCGGAGTGATCTTATGGGAGCTTGTGACCATGCAACAGCCATGGAATGGACTTAGCCCTGCCCAGGTGGTTGGAGCTGTGGCTTTCCAAAACAGAAGGCTTTCTATCCCACAGAATACCTCTCCAGTGTTGGCTTCTCTTATGGAATCTTGTTGGGCTGATGACCCTGCTCAGCGCCCCTCTTTCTCTAGTATAGTAGAGACACTGAAGAAGCTGCTAAAGTCTCCACTGCAGTTAATACAGATGGGGGGTACATAA 2718 0.4592 MPHRTTYFFPRQFPDRRFDASSKELLAHEKKIGGESNRKGTRTTKDVTADRTYNASDLFTGSDKFRSKKQLAAFCDWLVEKKGDRSGHVRLRSRNDEGDRDVLLPPPPAPVPEVVAGKDQQFDRQVSLPRVSSGSSYAGSLFSGTTVEGNVSSGLKDSHTNSHSQESTRREVDEEKESAAQKSRESYYLQLTLAKRLASQASLACEPVLFLQESGAEGNAVSFDPDVVSYRLWVSGCLSYTDKISDGFYNILGMNPYVWVMCNELEEGRRLPPLMALKAVEPNDTSMEVVLVDRRGDSRLKELEDKAHQLYCASENTLVLVEQLGKLVAIYMGGSFPVEQGDLHKQWKLVSKRLRDFQKCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIDDKQSSREYVVDLVGEPGNVHGPDSSITGGLLSSMPSPLQISHLKEYQQPYMDNESCCQIQNSKNTCIYPEDPLYLGNEKNTLYTPTDQICERMESSVLPLEFNGNTDRCIIQSAMLQSVQSNVSEAVDASASGVSIHECFRIAGEKIVIQQAHKKEIALSGSPITSKALKQPKVSLSSKSNIKEVEGRLENRGRFHTVTIPRYLNLEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQNFQDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPTSAEILDQRRRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFLSSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWNGLSPAQVVGAVAFQNRRLSIPQNTSPVLASLMESCWADDPAQRPSFSSIVETLKKLLKSPLQLIQMGGT* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0587 905 CDD STKc_MAP3K-like 641 889 - -
Vvi18g0587 905 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 175 894 - -
Vvi18g0587 905 Pfam Protein tyrosine and serine/threonine kinase 635 889 IPR001245 GO:0004672|GO:0006468
Vvi18g0587 905 SMART serkin_6 635 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0587 905 ProSitePatterns Protein kinases ATP-binding region signature. 641 662 IPR017441 GO:0005524
Vvi18g0587 905 MobiDBLite consensus disorder prediction 89 113 - -
Vvi18g0587 905 Pfam Ethylene-responsive protein kinase Le-CTR1 226 432 - -
Vvi18g0587 905 FunFam Serine/threonine-protein kinase isoform 1 625 713 - -
Vvi18g0587 905 ProSitePatterns Serine/Threonine protein kinases active-site signature. 756 768 IPR008271 GO:0004672|GO:0006468
Vvi18g0587 905 ProSiteProfiles Protein kinase domain profile. 635 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0587 905 Gene3D Transferase(Phosphotransferase) domain 1 714 899 - -
Vvi18g0587 905 MobiDBLite consensus disorder prediction 162 179 - -
Vvi18g0587 905 MobiDBLite consensus disorder prediction 150 179 - -
Vvi18g0587 905 FunFam Serine/threonine-protein kinase CTR1 714 899 - -
Vvi18g0587 905 SUPERFAMILY Protein kinase-like (PK-like) 610 889 IPR011009 -
Vvi18g0587 905 PRINTS Tyrosine kinase catalytic domain signature 816 838 IPR001245 GO:0004672|GO:0006468
Vvi18g0587 905 PRINTS Tyrosine kinase catalytic domain signature 860 882 IPR001245 GO:0004672|GO:0006468
Vvi18g0587 905 PRINTS Tyrosine kinase catalytic domain signature 709 722 IPR001245 GO:0004672|GO:0006468
Vvi18g0587 905 PRINTS Tyrosine kinase catalytic domain signature 750 768 IPR001245 GO:0004672|GO:0006468
Vvi18g0587 905 Gene3D Phosphorylase Kinase; domain 1 628 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0587 Vvi-Chr18 5939861 5949276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0587 1 904 MAP Kinase Kinase Kinase AT4G24480 58.872 0.0 1084
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vvi18g0587 PK_Tyr_Ser-Thr 4.5e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0587 - - vvi:100254015 1799.25