Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0582 ATGAGAAAACCGGAGGCAAAGTTTTCAGGCATGGAGTCAGCGTTTTCAGGTTTTGTACTTGACCCTGAAAAATGTAGTCGTCTAAGCTTGGGAGAGAAAAGAGAACTAGTTCATGAAATTGCTCAGTGGTCGAAAGATGCCCCGGAGATTCTTCGTTCATTTACTCGCAGAGAGCTTCTTGAAATCATCTGTGCTGAAATGGGTAAAGAGAGAAAGTACACTGGATTCACAAAGTTTAGAATGATAGAGCACCTGCTAAAGTTAATTTCTAAGAAGTCCAAGAACAGAACTGATAACTCTATTGCTTCTTCCCCAGCCAAAACTCAAATTGGATCCAAACGACAGAGAAAGAAAGAAAACCCACTTCAACCACTTACTGACCTGGATCATTTTTCCCCAGAGAAATGCAAAGAAGTTAAAACCCTGCTCTGTCAGAACCTTGCATGCAGAGCTAGTTTGAGTCCAGAGGATGCTTTTTGCAAGAGATGTTCTTGCTGTATCTGTCATCAGTATGATGATAACAAGGATCCTAGTCTATGGTTGACCTGCAGTTCAGGTTCTCCTAACAAGGATGACTCTTGTGGCATGTCATGCCATCTGACATGTGCTCTCAAGCATGAAAGAACTGGCATTACGAAGAATGGCTGTCGTCCAAAGTTGGATGGGGAATTCTATTGTGCTTCTTGTGGGAAAATTAATGGACTATTGAGAACCTGGAGAAAACAGTTAATGGTTGCCAAGGAGGCTAGAAGAGTAGATGTACTATGTCTGCGTGTCTTCCTGAGCCACAAGATTCTCAAAGGAACTGAGCAATACAAGGACCTGCAAAAGACTATGGAAACTGCCGTGAAAAGGCTGAAGAATGAAGTGGGGCCTCTTGATCGAGTGTGCACAAAGATGGCACGTGGGATTGTCAACAGGCTCTCCTGTGGTGCAGAGGTTCAGAAATTGTGCACTTCTGCAGTTGAAGCTTTTGATTCCATGTTTCCTGACCCTTACCCTGCTGATACAGATCAGAAAGAACAAGCAGGGATGCAGATACGATTTGAAGAATGTTCCCCAACTTCAGTGGTCATTGTACTAGGATATGAAGACCATTTGTTGGAGGAATTCTTAGGCTGCAGGCTGTGGCATCGGAAGTCTACTATGAAGGATTATCCAGAAAAACCCACTTACATTGTACTGAGGCCAGAAAAACGATTCCAGGTGACTGATCTCAATCCTTCAACTGAGTACTTGTGTAAGGTTTCCCTGTTCAGCAGCACAAGGGTTTTGGGTGTTTGGGAAGCCAAATGGGTCACACCCTCATTAAGCAGAAGCTCTGTCTCAGCTTTAGATGATGAACATAGAAGGGGAGAGAATACCTTAATGCTTCAAGAATATTCTCAGATGGATTCAACGAATTCTAGTGATACTAAATTGGTCTCCTGTGACCACTCTGAGAAGCTTAGATCACTGGATGACATCAACAAGAACAAGAATTCTGGATTCCACATACTGCCTCCTCCCATGGAGGCTGTTCCTTTACTGATCCCCTCATCAGTTCCTCCTTCCACACCATCTAAAACTGATAAAATGCATGAAGTTCCGGGCTTGGGTAGCAAGAAGCAGATCAGAGAGAGTGACTATGAATACTCTGTCAGAGTTATCAAATGGTTAGAATGCCAAGGGCACATAGCTGAAGATTTTAGAGTGAAATTTCTCACTTGGTTCAGCTTGAAAGCAACAATGCAAGAAAGAAGGGTGGTTAGTGTTTTTGTGGATACTCTGATTGATGACCCGCCAAGTTTGGCTGAGCAGCTCATCCATTCCTTCATGGACGAGATTTGTTATGACCAGAAATCGGTTTCTAAGCAAGGGTTCTGCGCTAGCCTTTGGCACTGA 1884 0.4347 MRKPEAKFSGMESAFSGFVLDPEKCSRLSLGEKRELVHEIAQWSKDAPEILRSFTRRELLEIICAEMGKERKYTGFTKFRMIEHLLKLISKKSKNRTDNSIASSPAKTQIGSKRQRKKENPLQPLTDLDHFSPEKCKEVKTLLCQNLACRASLSPEDAFCKRCSCCICHQYDDNKDPSLWLTCSSGSPNKDDSCGMSCHLTCALKHERTGITKNGCRPKLDGEFYCASCGKINGLLRTWRKQLMVAKEARRVDVLCLRVFLSHKILKGTEQYKDLQKTMETAVKRLKNEVGPLDRVCTKMARGIVNRLSCGAEVQKLCTSAVEAFDSMFPDPYPADTDQKEQAGMQIRFEECSPTSVVIVLGYEDHLLEEFLGCRLWHRKSTMKDYPEKPTYIVLRPEKRFQVTDLNPSTEYLCKVSLFSSTRVLGVWEAKWVTPSLSRSSVSALDDEHRRGENTLMLQEYSQMDSTNSSDTKLVSCDHSEKLRSLDDINKNKNSGFHILPPPMEAVPLLIPSSVPPSTPSKTDKMHEVPGLGSKKQIRESDYEYSVRVIKWLECQGHIAEDFRVKFLTWFSLKATMQERRVVSVFVDTLIDDPPSLAEQLIHSFMDEICYDQKSVSKQGFCASLWH* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0582 627 PANTHER VIN3-LIKE PROTEIN 2-RELATED 18 487 IPR044514 GO:0010048|GO:0040029
Vvi18g0582 627 CDD PHD_VIN3_plant 164 229 - -
Vvi18g0582 627 Coils Coil 269 289 - -
Vvi18g0582 627 Pfam PHD - plant homeodomain finger protein 144 263 IPR032881 -
Vvi18g0582 627 MobiDBLite consensus disorder prediction 96 110 - -
Vvi18g0582 627 MobiDBLite consensus disorder prediction 96 126 - -
Vvi18g0582 627 MobiDBLite consensus disorder prediction 112 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0582 Vvi-Chr18 5908436 5912901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0582 28 627 PHD Gene Family AT5G57380 36.758 8.68e-121 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0582 - - vvi:100266086 1271.53