Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0579 ATGGTTGAGATGCCAAAGATGCGCAAAAAGGGCACAATCAGTGAGGAAGACGTCTCCGCTCTATTGCAAAGGTATACGCCGACTGCGGTGCTAGCACTGCTTCAAGAAGTGGCACAGTTACCGGATGTGAAGATCGATTGGAATGCGTTGGTGAATAAGACTTCAACTGGGATTTCTAATGCCAGAGAGTATCAGATGCTCTGGCGCCATTTGGCCTATGGCCACGCATTGCTCGAAAAATTGGAAGATGGGGCTCAGCCGTTGGATGATGATAGTGACTTGGAATATGATTTAGAAGCTTTCCCCAGCATTAGTACTGAAGCTTCAGCAGAGGCTACTGCATGTGTGAAAGTACTGATTGCTTCCAGTTTACCAAGTGATTCCAGTCTCCCAAACAGCTCAATGGTTGAGGCTCCATTGACTATAAATATACCCTGTGGCCAGTCATCCAGAGCTCCTTCAGAATATTCACGACTTTCTGGTTCCATGCAAGGGACAAACATCACTATTCCAGTTTCCGTTCAAAAATCTGAAGGATTTGATGCGAATGGATCAACAAGTGGCAGTCTTCCAGCTCGAAAGAAACGAAAACCATGGTCATCAGACGAGGATAAGGAACTGATTGCTGCTGTACAAAAATGTGGTGAAGGGAATTGGGCAAATATCTTGAAAGGGGACTTCAAGGGGGATAGATCTGCTTCACAGCTATCTCAGAGGTGGACCATTATCAGGAAGAAGCACAAAAACTTGAATGTGGGTGGAGCTAACTCAAACGGCTCACAGCTCTCTGAGGCGCAGTTGGCTGCTCGTCATGCGATGTCCCTGGCCCTTGATATGCCAGTGAAAAACTTAACGACGTCTTCTTCAATTGCAGGAACAAATCCAAATGCTACATCCAGTAACTCAGCTTTTCCTGCTACCCCTGCTGAAGCTTTGCCGGCTAGCACCAATATTTCACAAGCCCAACAACTATCTCAACAAGGCCCCGTGTCAACTTTATCTCAAATGGGATCATTGGGTTCTGCACCAAAATCCCGGGCAACCTCAAAAAAAACATCAGCAAAGTCTACTTTCAGCTCACAATCTATGCTAAAAGCTACTGCAGTTGCTGCTGGGGCCCGCATTGCTACCCCATCAGCTGCTGCATCACTGCTAAAAGATGCACAATCAAGGAATGCTGTCCATATCATGCCTGGAGGGAGTACATTAATCAAATCATCTGTTGCTGGTGGTGCAAACCCATTACCTGCCAACCACTTGGGAGCTCATCCTAATGTACACTACAAGTGTGCTGGCCCACCAACTACATCACTTTCTACCTATTCTGCTGTTGCACCAAGTGTGTCACGAACTGGTTCTGCAAAACCTGCAGCACCAGGTGGTCAGCTTGCTCCATCCCCTTCTGCCACATCTGTAAATATTTCTTCTGAACAAACTAATGCAGCCACCACTAGTCTGGCTGTTGAATATCCAGCGAAGCAGGAGACTAAAACTAGTGAAGAGACAAAAGTTCCTATCTCAGGCAATGTACCAAAAGCAAAAGTCCTAGAAGATCAAGCTTGTGTTTCAAGCAACACTGCAAGTGAGCAAGTTCAGGAAGATCAAGCAACTTTGTCAAACACAGAAGTAGTTCTCGAAAATAAAAAAGCTATGGTTTCAGATACTAAATGTTTGTTAAAGACAGAAACAGCTGAGAATGATGGTGAGGTTGCTGAAAGTCAAAATGTGAATGATAATAAGATAATGGATTTTCGAGTTGCAGGAGAATGTGAGAATCAATCTGTGGCTAACGAGAATTCAGGGAACCAAAACGCGAATGAGAAACAGACAGATTTACCAAACACAGCAACAGATTGTGGTGAGAAATCGGATGAGGTTCTATACAAAGCAACAGCTGGAGAGATATAG 1908 0.4486 MVEMPKMRKKGTISEEDVSALLQRYTPTAVLALLQEVAQLPDVKIDWNALVNKTSTGISNAREYQMLWRHLAYGHALLEKLEDGAQPLDDDSDLEYDLEAFPSISTEASAEATACVKVLIASSLPSDSSLPNSSMVEAPLTINIPCGQSSRAPSEYSRLSGSMQGTNITIPVSVQKSEGFDANGSTSGSLPARKKRKPWSSDEDKELIAAVQKCGEGNWANILKGDFKGDRSASQLSQRWTIIRKKHKNLNVGGANSNGSQLSEAQLAARHAMSLALDMPVKNLTTSSSIAGTNPNATSSNSAFPATPAEALPASTNISQAQQLSQQGPVSTLSQMGSLGSAPKSRATSKKTSAKSTFSSQSMLKATAVAAGARIATPSAAASLLKDAQSRNAVHIMPGGSTLIKSSVAGGANPLPANHLGAHPNVHYKCAGPPTTSLSTYSAVAPSVSRTGSAKPAAPGGQLAPSPSATSVNISSEQTNAATTSLAVEYPAKQETKTSEETKVPISGNVPKAKVLEDQACVSSNTASEQVQEDQATLSNTEVVLENKKAMVSDTKCLLKTETAENDGEVAESQNVNDNKIMDFRVAGECENQSVANENSGNQNANEKQTDLPNTATDCGEKSDEVLYKATAGEI* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0579 635 MobiDBLite consensus disorder prediction 449 486 - -
Vvi18g0579 635 MobiDBLite consensus disorder prediction 320 359 - -
Vvi18g0579 635 MobiDBLite consensus disorder prediction 464 486 - -
Vvi18g0579 635 MobiDBLite consensus disorder prediction 592 621 - -
Vvi18g0579 635 ProSiteProfiles Myb-like domain profile. 191 244 IPR001005 -
Vvi18g0579 635 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 624 - -
Vvi18g0579 635 MobiDBLite consensus disorder prediction 177 203 - -
Vvi18g0579 635 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 248 IPR017930 -
Vvi18g0579 635 CDD SANT_TRF 197 245 - -
Vvi18g0579 635 Pfam Myb-like DNA-binding domain 196 240 IPR001005 -
Vvi18g0579 635 MobiDBLite consensus disorder prediction 592 617 - -
Vvi18g0579 635 SMART sant 195 246 IPR001005 -
Vvi18g0579 635 MobiDBLite consensus disorder prediction 287 308 - -
Vvi18g0579 635 Gene3D - 191 250 - -
Vvi18g0579 635 SUPERFAMILY Homeodomain-like 193 245 IPR009057 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi18g0579 Myb_DNA-binding 1.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0579 - - vvi:100245507 1178.31