Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0571 ATGGACTTTAGAAGCAGCTCCAAGTGGGAGGGCAGTATTTCACCAATATTGGAATGGTCATGTAATGCTTTACAAGGAAGCCCTCTTCTACTTCAATTGGTTCCAGCAGTTAGCATTGTTGCTTTTGCTACATGGGGTCTGGGGCCGCTAATGCGTCTTGGCAGGAACCTTTTCCTCAATAAGACTGATAATAGTAGTTGGAAAAAGAGTAGCACGTATTATGTTATGACCTATTACCTTCGACCTTTGCTGTTATGGATTGGAGCAATGCTTATTTGCAGAGCATTGGATCCAATAATTCTACCTTCAAAAGAGAGCCAGGCTGTTAAGCAACGACTTCTAATTTTTATACGATCATTATCAACGGTGCTAGCCTCTGCCTGTTGTTTATCAAGCTTGATTCAAGAAGTACAAAAATTCTTCATGGAAAGCAATGACTCCAGTGATGCTAGAAATATTGGCTTCCAGTCTGCCGGGAAAGCTGTTTATACTGCAATATGGGTTGCTGCTGTTTCATTGTTCATGGAGTTGCTGGGTTTTCCCACCCAGAAATGGCTAACTGCTGGGGGTCTTGGCACAGTATTGCTTACTCTTGCTGGTCGTGAGATATTCACAAATTTCCTTTCAAGTGTAATGATCCATGCAACACGACCATTTGCTGTGAATGAACGGATTCAAACAAAGATTAAAGATTCTGAAGTTTCTGGTACAGTTGAGCGTGTGGGTTGGTGGTCACCGACAATCATAAGAGGTGATGATCGTGAAGCAGTTCATGTTCCAAACAACAAATTCACAGTGAATGTTGTGAGGAATCTCAGCCAGAGAACTCATTGGCGCATCAAGACACAACTTGCCATCAGCCACTTGGATGTCGATAAGATTAATAATGTTGTAGCTGATATGCGCAAGGTTTTATCCAAAAATCCTCAAATAGAGCAGCAAAGGTTGCATAGAAGAGTGTTTCTGGACTATATCGATCCAGAGAACCAGGCCCTCTTGATCTTGGTATCTTGCTTTGTGAAAACCTCACGTATTGAAGAGTACCTGTGTGTCAAGGAAGCAATACTCTTGGATCTCCTCAGAGTTGTCAGCCATCATCAAGCTCGCCTTGCAACACCCATTCGTACAGTTCAGAAAGAATACGGTGTGGCTGACATGGAAATGGAAAATATTCCATTTGCTGACCCCATATTCACCCGCTCCCAAGCAGCTGCTAACCGTCCACTCCTGCAGATTGAGCCCTCTTATAAAATGAACGGTGATGATAAAATGAAGGCTTCCACAGGTTCAGCACGCCGGAACAAAGAAAAGGTTGCAAAAATTGAAGCAAGGCCTAAATCTGATTTGAAGCCAGGTTCCAAGGCTGGGGCATCGTCAATTCTAGAAAAGGATGCCAAGATTAAAGCAAACACAAAATCTGATTCGAAGCCAGGTTCCAAGGCTGGAGCGTCATCAAATAGTGACTCCACAATAGCTGACAACATTGCAGCAACATCAATCACCAACTCCAAACTACAAGGTTTCAGAAACATCAATATCTGA 1542 0.4293 MDFRSSSKWEGSISPILEWSCNALQGSPLLLQLVPAVSIVAFATWGLGPLMRLGRNLFLNKTDNSSWKKSSTYYVMTYYLRPLLLWIGAMLICRALDPIILPSKESQAVKQRLLIFIRSLSTVLASACCLSSLIQEVQKFFMESNDSSDARNIGFQSAGKAVYTAIWVAAVSLFMELLGFPTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFAVNERIQTKIKDSEVSGTVERVGWWSPTIIRGDDREAVHVPNNKFTVNVVRNLSQRTHWRIKTQLAISHLDVDKINNVVADMRKVLSKNPQIEQQRLHRRVFLDYIDPENQALLILVSCFVKTSRIEEYLCVKEAILLDLLRVVSHHQARLATPIRTVQKEYGVADMEMENIPFADPIFTRSQAAANRPLLQIEPSYKMNGDDKMKASTGSARRNKEKVAKIEARPKSDLKPGSKAGASSILEKDAKIKANTKSDSKPGSKAGASSNSDSTIADNIAATSITNSKLQGFRNINI* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0571 513 MobiDBLite consensus disorder prediction 426 449 - -
Vvi18g0571 513 MobiDBLite consensus disorder prediction 411 490 - -
Vvi18g0571 513 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 12 502 IPR045042 -
Vvi18g0571 513 Pfam Mechanosensitive ion channel 160 368 IPR006685 GO:0016020|GO:0055085
Vvi18g0571 513 MobiDBLite consensus disorder prediction 474 490 - -
Vvi18g0571 513 Gene3D - 218 271 IPR023408 -
Vvi18g0571 513 Gene3D - 110 217 - -
Vvi18g0571 513 SUPERFAMILY Sm-like ribonucleoproteins 203 273 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0571 Vvi-Chr18 5766283 5775714 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0571 7 492 Mechanosensitive Ion Channel Family AT1G58200 62.800 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0571 K22047 - vvi:100264429 962.214