Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0569 ATGGCCCTTGCTGGTTCTATGCAATTATCCCGTGAATTGGGAATTCAGAATAGGCATGGGTACAGTAACCAACCTAAGATTATGATGGCAAAAGATCGATTACATCTTCTCAGCATCACTCTCTCATCTCATGCTTCGAGACAGGATGCTTTGAGTCTTCATCTTTTAAATAGCATGCGTGGGTCAATAACTCCTGTATCTTCTAGATGTGAATTTTTCCTGTGCCGATCTTTTCTAGCACCAGGTGGAGGAAATGAGATTTCAGTTTTAAAATCTGCTGCCTTGGTTTTGACAAGGTCATGTAATGCTTTACGAGGAAGGCCTCTTGTACTTCAATTGGTTCCAGCAGTTAGCATTGTTGCTTTTGCTGCATGGGGTCTAGGGCCGCTAATGCGTCTTAGCAGGAATCTTTTCCTCAATAAGACCGATAGTAGTTGGAAAAAGAGTAGTACATATTATGTTCTGACCTATTACCTTCAACCTTTGCTGCTTTGGATTGGAGCAATGCTTATTTGCAGAGCATTGGATCCAATCATTCTACCTTCAAAAGAGAGCCAAGCTGTTAAGCAACGACTTCTAATTTTTATACGATCGTTATCAACGGTGCTGGCCTCTGCCTATTGTTTATCAAGCTTGATTCAACAAGTACAAAATTTCTTCATGGAAAACAATGACTCCAGTGATGCTAGAACTATGGGCTTCCAGTTTGCTGGGAAAGCTGTTTATACTGCAATATGGGTGGCTGCTGTTTCATTGTTCATGGAGTTGCTGGGTTTTTCCACCCAGAAATGGCTAACTGCTGGGGGTCTTGGCACAGTATTGCTCACCCTTGCTGGTCGTGAGATATTCACAAATTTCCTTTCAAGCGTAATGATCCATGCAACACGACCATTTGTTGTGAACGAATGGATTCAAACAAAGATTGAAGGTTATGAAGTTTCTGGGACTGTTGAGCATGTGGGTTGGTGGTCACCGACAATCATAAGAGGTGATGATCGGGAAGCAGTTCACATTCCAAACCACAAATTCACAGTGAATGTTGTGAGGAATCTTAGCCAGAAGACCCATTGGCGCATCAAGACTCACCTTGCCATCAGCCACTTGGATGTCAATAAGATTAATAATATTGTAGCTGATATGCGTAAGGTTTTAGCCAAAAATCCTCAAGTAGAGCAGCAAAGGTTGCATAGAAGAGTGTTTCTGGACTATATTGATCCAGAGAACCAGGCTCTTTTGATTTTGGTTTCATGCTTTGTGAAAACCCCACGTTTTGAAGAGTACCTTTGTGTGAAGGAAGCAATACTCTTGGATCTTCTCAGAGTTATCAGCCATCATCAAGCTCGCCTTGCAACACCCATTCGTACGGTTCAGAAAGAATACAGCATGGCTGACATGGAAATGGAAAATATTCCATTTGCTGACCCGATATTCACCCGCTCCAGTGCAGCTGCTAACCGTCCACTCCTGCTGATTGAGCCCTCTTATAAAATGAATGGTGATGATAAAACCAAGGCTTCCACAGGTTCAGCATGCCAGAACGAGGAAAAAGATGCCAATATTGATGCAAGCTCAACATCTGAATCGAAGCCAGATGCCAAGGCTGGAGCATCGTCAATTCTTGACTCCACAACAGATGACAACGTTGCAGCAACATCAATCTCCAACTCCAGCACAAACAGTAAGGTTTCAGCAACGTCAATATCTGACCCCAAAATCCAGAATATGGTGACTGATGGTTCAACCCAAAATAACTATGAAGAACAGCAGTCAGAGGCAAGCATGGAAAAGGTGAGGGAGGACATAAACCCAGGTGGATCAGCTTTTGAGAAGCCGTCACTGAATTTCCCAGAATCTGGTGCTGGAAAAGCAGATGGTCTTCCTTCTGCGACTCCATTGGCAAAGCAAGATGGCAATCGAGCATCAATTGCTACCCCTGCCTTGGAAGAGAACATTGTTCTTGGTGTAGCTCTTGAAGGCTCAAAAAGGACACTCCCAATTGAGGAAGAAGAAATGGTTGTGTCCCCTAGCGGAGCAGAATCAAAAGAATTGGCTGCCTGCCAGAATGGCAATGTTTCAGCCCCCAATGGCAAGGATAAGAAAGAAGGTCAGATAGACATCAGCAGCTCCTAG 2130 0.4366 MALAGSMQLSRELGIQNRHGYSNQPKIMMAKDRLHLLSITLSSHASRQDALSLHLLNSMRGSITPVSSRCEFFLCRSFLAPGGGNEISVLKSAALVLTRSCNALRGRPLVLQLVPAVSIVAFAAWGLGPLMRLSRNLFLNKTDSSWKKSSTYYVLTYYLQPLLLWIGAMLICRALDPIILPSKESQAVKQRLLIFIRSLSTVLASAYCLSSLIQQVQNFFMENNDSSDARTMGFQFAGKAVYTAIWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDYIDPENQALLILVSCFVKTPRFEEYLCVKEAILLDLLRVISHHQARLATPIRTVQKEYSMADMEMENIPFADPIFTRSSAAANRPLLLIEPSYKMNGDDKTKASTGSACQNEEKDANIDASSTSESKPDAKAGASSILDSTTDDNVAATSISNSSTNSKVSATSISDPKIQNMVTDGSTQNNYEEQQSEASMEKVREDINPGGSAFEKPSLNFPESGAGKADGLPSATPLAKQDGNRASIATPALEENIVLGVALEGSKRTLPIEEEEMVVSPSGAESKELAACQNGNVSAPNGKDKKEGQIDISSS* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0569 709 Pfam Mechanosensitive ion channel 239 446 IPR006685 GO:0016020|GO:0055085
Vvi18g0569 709 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Vvi18g0569 709 Gene3D - 192 296 - -
Vvi18g0569 709 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 704 IPR045042 -
Vvi18g0569 709 MobiDBLite consensus disorder prediction 500 590 - -
Vvi18g0569 709 MobiDBLite consensus disorder prediction 687 709 - -
Vvi18g0569 709 MobiDBLite consensus disorder prediction 499 641 - -
Vvi18g0569 709 Gene3D - 298 353 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0569 Vvi-Chr18 5751316 5760947 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0569 6 684 Mechanosensitive Ion Channel Family AT1G58200 58.116 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0569 K22047 - vvi:100259028 1370.91