Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0565 ATGGAGGAAGGAAGCAACAACAGGGCTGAGGCCGAACGCCTACTGGGTGTCGCCGAGAAGCTTTTGCATACCCGTGATTTCAATGGCTCTAAAGACTTCGCAATTCTCGCCCAGGAGACCGAGCCCCTCCTCGACGGCACCGATCAGATCTTGGCCGTCGCTGACGTCCTCATCGCCTCTGAAAAGCGCATCAACAACCACCACGATTGGTACGCCATCTTGCAGACCGACCGCCGATCCGATGACCTTGATCTCATCAAGAAACAGTATAGGAGACTCGCTCTCCTTCTGCACCCGGACAAGAACAAGTTCGTCTTCGCCGATCACGCCTTCAAGCTTGTGGCGGACGCCTGGGCGGTCCTCTCCGACCCCGCTAAGAAGTCGCTTTACGACAACGAGCTCAGCCTCTTCTCCAAAGTCGATCTCGCGGCGTTGAAGGGTGACAGATTGCCGGTGAGGCGGAGCCTCAGGAAAAACAACAACGGCAGCAAGAAGCCTAAGGGAATGGAGGAGCCGAGCTCCGGCTCGTCCGATGATCAACGGCCGTTGCGGCTAACGAGTTTTTGGACAGCCTGTCCATATTGTTATATATTGTATGAGTACCCTAGGGTTTACGAGGGTTGTTGTTTGAGGTGTCAGAATTGCCAGAGGGCGTTTCACGCGGCATTGGTACCGTCGTTGCCGCCGTTGGTGCCGGGCAAGGAGGCCTATTACTGCTGCTGGGGTTTCTTTCCGCTAGGGTTTGCAATTTCTGGGGCAGAGGGCGGAAAGGGTAAGGGTGCGGGAGGGTTTCCAAATTGGATGCCACCCATGTTTGGAGGTGGAGTTGCGGCGGAGGGCGGTGGCGGGAGTGCTGGTGGGGTTGGGGTCGTAGAGGTGTCGGACGGAAGTGCATCAGCTGGATTGGTGAAGCCGAAGAGGAGGGGAAGACCTCCAAAGAAGGCAGTCCACGTCTAA 957 0.5674 MEEGSNNRAEAERLLGVAEKLLHTRDFNGSKDFAILAQETEPLLDGTDQILAVADVLIASEKRINNHHDWYAILQTDRRSDDLDLIKKQYRRLALLLHPDKNKFVFADHAFKLVADAWAVLSDPAKKSLYDNELSLFSKVDLAALKGDRLPVRRSLRKNNNGSKKPKGMEEPSSGSSDDQRPLRLTSFWTACPYCYILYEYPRVYEGCCLRCQNCQRAFHAALVPSLPPLVPGKEAYYCCWGFFPLGFAISGAEGGKGKGAGGFPNWMPPMFGGGVAAEGGGGSAGGVGVVEVSDGSASAGLVKPKRRGRPPKKAVHV* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0565 318 Pfam DnaJ domain 69 131 IPR001623 -
Vvi18g0565 318 SUPERFAMILY Chaperone J-domain 63 134 IPR036869 -
Vvi18g0565 318 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 274 - -
Vvi18g0565 318 SMART dnaj_3 68 126 IPR001623 -
Vvi18g0565 318 PRINTS DnaJ domain signature 106 126 IPR001623 -
Vvi18g0565 318 PRINTS DnaJ domain signature 71 89 IPR001623 -
Vvi18g0565 318 PRINTS DnaJ domain signature 90 105 IPR001623 -
Vvi18g0565 318 ProSiteProfiles dnaJ domain profile. 69 134 IPR001623 -
Vvi18g0565 318 MobiDBLite consensus disorder prediction 155 180 - -
Vvi18g0565 318 CDD DnaJ 69 123 IPR001623 -
Vvi18g0565 318 Gene3D DnaJ domain 56 143 IPR036869 -
Vvi18g0565 318 ProSitePatterns Nt-dnaJ domain signature. 111 130 IPR018253 -
Vvi18g0565 318 MobiDBLite consensus disorder prediction 296 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0565 Vvi-Chr18 5687438 5688394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0565 1 316 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 54.252 1.43e-111 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0565 - - vvi:100260770 589.341