Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0561 ATGCTTCCGTTTCAAAGCTACTATGAACCTGTTCAGCAGATGAAGTTGAAGTTGGAGGATGGGGATTCAGGAACAAGGGTGGAGGGAAAATCGACGGCTGCATGCAACAGCCACAGCGAGGCTGAGAGGAGGCGCAGACAGCGAATTAACGCTCACCTCTCCACTCTCCGCACTCTCCTCCCTAACACCACCAAAACAGACAAGGCGTCATTGCTGGCGGAGGTGGTTCGGCACGTGACGGAGCTCAGGAAGCGCGCTGCTGACGTGGCGGGGCAGAACGGAGACGGATGCTGCAGCGGCGGTGGATCGGAGTCGTGGACGTTTCCTGGAGAGACGGACGAGGTGACTTTGGGGTACTACGAGGGAGATGAGAGGCTGATAAAGGCGACGTTGTGCTGCGAGGATAGACCGAGTTTGAACCGGGATCTGACGCAGGCAATTGGCTCGGTGAGGGCACGGGTGGTGCGGGCCGAGATGGCGACGGTGGGAGGGCGGACGAAGAGCGTGGTGGTGATGCAGTGGGGTGGTGGTGGGGAGGCTGAACTTGGGAATTTGAGAAGGGCATTGAAAGCTGTGGTGGAAAATCGGGCTTCGGGTTTTGGGTCCACCGGGGTGTTCCCACTTCACAAGCGCCCTCGTTTCTCTACTTCAAACGCTTCTTCTTAA 666 0.5796 MLPFQSYYEPVQQMKLKLEDGDSGTRVEGKSTAACNSHSEAERRRRQRINAHLSTLRTLLPNTTKTDKASLLAEVVRHVTELRKRAADVAGQNGDGCCSGGGSESWTFPGETDEVTLGYYEGDERLIKATLCCEDRPSLNRDLTQAIGSVRARVVRAEMATVGGRTKSVVVMQWGGGGEAELGNLRRALKAVVENRASGFGSTGVFPLHKRPRFSTSNASS* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0561 221 PANTHER TRANSCRIPTION FACTOR BHLH30 12 218 IPR045847 GO:0003700|GO:0006355
Vvi18g0561 221 SMART finulus 39 88 IPR011598 GO:0046983
Vvi18g0561 221 CDD bHLH_AtAIG1_like 28 90 - -
Vvi18g0561 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 37 90 IPR036638 GO:0046983
Vvi18g0561 221 SUPERFAMILY ACT-like 130 194 IPR045865 -
Vvi18g0561 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 33 82 IPR011598 GO:0046983
Vvi18g0561 221 Pfam Helix-loop-helix DNA-binding domain 35 82 IPR011598 GO:0046983
Vvi18g0561 221 Gene3D - 28 89 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0561 Vvi-Chr18 5668081 5668832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0561 27 194 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 44.693 4.95e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi18g0561 HLH 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0561 - - vvi:104882497 427.557