Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0558 ATGAAAGGTGAATATGTAGATGGCAAGAATGAGAGCAATAACATGTTCGCCAAGCTTCACCAACCCCACAATTTCCAACAGCCTCTCCATCCTCACCACCACCACCACCTCCAACAGCAGCAGCAGCCCCACCACCAACATCACTTCCAAATCAGCCGAGAATGTCAGACTTCGGAGGAAGACGACAGCCGCAGCAGCGGTGGTGCCACCGCCGTCGCCGCAGCCGGTGCTACTACTCCTACGCCCACCAAACCTAAATCTGGCGACGGTGACGGGGCTACCATTGAAGTTGTGAGGAGACCCAGAGGCAGGCCTCCCGGTTCCAAGAACAAGCCCAAACCCCCTGTTATTATTACTCGGGATACTGAGCCCGCCATGAGCCCCTATGTTCTTGAGGTCCCTGGCGGCGTCGATATTGTCGAAGCTATTGCTCGCTTCTCTCGCCGCCGCAATATTGGCCTTTGTGTGCTTAATGGCTCCGGCACCGTCGCCAACGTCACCCTCCGGCAGCCCTCCACCACCCCAGGTGCTACAGTTACCTTCCATGGGCGTTTTGATATTCTCTCAATCTCTGCTACCATTATCCCCCAATCGGCCTCCTCTCCGATTCCGTCATCTGCCAACGGGTTCACCATCTCCCTCGCGGGTCCGCAGGGCCAGATCGTCGGGGGCTGCCACCTACCATCAGATGTAATATGGGCACCCACAGCGAGACAACCACCACCACCACCGTACTGA 738 0.5705 MKGEYVDGKNESNNMFAKLHQPHNFQQPLHPHHHHHLQQQQQPHHQHHFQISRECQTSEEDDSRSSGGATAVAAAGATTPTPTKPKSGDGDGATIEVVRRPRGRPPGSKNKPKPPVIITRDTEPAMSPYVLEVPGGVDIVEAIARFSRRRNIGLCVLNGSGTVANVTLRQPSTTPGATVTFHGRFDILSISATIIPQSASSPIPSSANGFTISLAGPQGQIVGGCHLPSDVIWAPTARQPPPPPY* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0558 245 CDD DUF296 128 235 IPR005175 -
Vvi18g0558 245 ProSiteProfiles PPC domain profile profile. 123 245 IPR005175 -
Vvi18g0558 245 MobiDBLite consensus disorder prediction 27 42 - -
Vvi18g0558 245 SUPERFAMILY AF0104/ALDC/Ptd012-like 125 234 - -
Vvi18g0558 245 MobiDBLite consensus disorder prediction 47 61 - -
Vvi18g0558 245 MobiDBLite consensus disorder prediction 25 119 - -
Vvi18g0558 245 Pfam Plants and Prokaryotes Conserved (PCC) domain 128 235 IPR005175 -
Vvi18g0558 245 Gene3D - 127 238 - -
Vvi18g0558 245 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 48 225 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0558 Vvi-Chr18 5652362 5653291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0558 91 224 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 68.345 9.07e-61 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0558 - - vvi:100255831 328.946