Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0547 ATGGCGGACGCACTCCTCTCGGCTTCGCTTCAAGTTCTATTCTACAGATTGGCTTCTGCAGAGCTCATCAACTTCATCCGGGCACAAAAGCTCAGCCATGAACTCCTCACCAACTTTAAGAGGAAATTGCTGGTTGTCCACAAAGCGCTCAATGATGCGGAGATGAAGCAATTTTCAGACCCACTAGTTAAAGACTGGCTGGTCCAAGTTAAGGATGTTGTGTATCACGCGGAGGACCTGTTAGACGAGATCGCTACCGACGCTTTGCGGTCCCAGATCGAAGCTGCTGACTCCCAAGATAGCGGAACTCATCAGGTGTGGAACTGGAAAAAGGTCTCTGCTTGGGTTAAGGCTCCATTTGCTAGTCAAAGTATGGAGTCCAGGGTCAAGGGCTTGATTTCTCTACTTGAAAACATTGCACAAGAAAAAGTTGAGCTAGGGCTGAAAGAAGGTGAGGGCGAGAAACTGTCACCAAGATCACCATCCACTTCTCTGGTGGATGAGTCCTTTGTGTACGGCAGGAATGAAATTAAAGAGGAGATGGTGAAGTGGTTGCTTTCTGATAAGGAAAATGCAACAGGCAACAACATAGATGTGATATCCATAATGGGCATGGGCGGCAGCGGCAAGACGACACTCGCTCAGCTTCTCTATAACCATGATAGAGTGAAGCAACACTTCCACTTGAAAGCATGGGTCTGTGTTTCCACCGAGTTTTTTCTAATCGAGGAGGTAACAAAATCATTTCTTAAGGAAATCGGTTCTGAAACTAAATCAGACGACACCCTAAATTTGCTTCAGCTTAAACTCAAAGAGAGCGTAGGTAACAAGAAATTTCTGCTCGTTCTCGACGACGTCTGGGATATGAAGTCTCTTGATTGGGATGGCCTACGAATTCCACTCCTCGCTGCAGCAGAGGGAAGCAAGATTGTTGTGACCAGTCGTAGTGAAACTGCTGCAAAAATCATGCGTGCAATCCGTAGTCATCATCTGGGGACATTAAGCCCTGAAGATAGTTGGTCCCTATTTACAAAACTCGCATTTCCAAATGGAGATTCCAGCGCTTATCCTCAGCTTGAAACTATTGGCAGAGAGATTGTGGACAAGTGCCAAGGATTGCCTTTGGCTGTAAAAGCACTCGGGAGCCTCTTGGACTCTAAGGCCGATAAAAGAGAATGGGAAGATATTTTGAACAGCAAAACATGGCATTCCCAGACTGATCATGAAATTCTTCCATCTTTTAGATTGAGTTATCAGCATCTTTCTCCCCCTGTGAAGCGTTGTTTTGCTTACTGTTCAATTTTTGCTAAGGACCATGAATTTGACAAAAAGAAGCTGATTCTATTATGGATGGCAGAAGGGCTTTTACACGCGGGACAAAGGGACGAAAGAATGGAAGAGGTAGGTGAGTCATGTTTTAATGAGCTTGTAGCAAAGTCATTTTTCCAAAAATCTATTACAAAAGAATCATGTTTTGTAATACATGATTTAATACATGACTTGGCTCAACATATCTCAGGAGAATTTTGTGTTCAATTGGAACAGTATAAGGTGCAAAAAATAACTGAGATGACTCGCCATTTTCGCTACTCTAATAGTGATGATGACAGGATGGTTGTATTTCAAAAGTTTGAGGCTGTTGGTGAAGCTAAACATCTTAGAACCTTTCTGGACGAGAAGAAATATCCATACTTCGGGTTTTATACATTGAGTAAAAGAGTTTTACAAAATATATTACCAAAATTTAAATCCTTGCGTGTGTTGTCATTGTGTGCATACAAGATAACTGAAGTGCCTGATTCAATACACAATTTAACACAATTGTGTTACTTGGATAGTTGGATCTCTCCTCAACACAGATTCAAAGATTACCTGAATCAGTATGTTGTTTATGCAATTTGCAAACAATGA 1911 0.4223 MADALLSASLQVLFYRLASAELINFIRAQKLSHELLTNFKRKLLVVHKALNDAEMKQFSDPLVKDWLVQVKDVVYHAEDLLDEIATDALRSQIEAADSQDSGTHQVWNWKKVSAWVKAPFASQSMESRVKGLISLLENIAQEKVELGLKEGEGEKLSPRSPSTSLVDESFVYGRNEIKEEMVKWLLSDKENATGNNIDVISIMGMGGSGKTTLAQLLYNHDRVKQHFHLKAWVCVSTEFFLIEEVTKSFLKEIGSETKSDDTLNLLQLKLKESVGNKKFLLVLDDVWDMKSLDWDGLRIPLLAAAEGSKIVVTSRSETAAKIMRAIRSHHLGTLSPEDSWSLFTKLAFPNGDSSAYPQLETIGREIVDKCQGLPLAVKALGSLLDSKADKREWEDILNSKTWHSQTDHEILPSFRLSYQHLSPPVKRCFAYCSIFAKDHEFDKKKLILLWMAEGLLHAGQRDERMEEVGESCFNELVAKSFFQKSITKESCFVIHDLIHDLAQHISGEFCVQLEQYKVQKITEMTRHFRYSNSDDDRMVVFQKFEAVGEAKHLRTFLDEKKYPYFGFYTLSKRVLQNILPKFKSLRVLSLCAYKITEVPDSIHNLTQLCYLDSWISPQHRFKDYLNQYVVYAICKQ* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0547 636 Gene3D - 418 505 IPR036388 -
Vvi18g0547 636 FunFam Probable disease resistance protein At1g61300 156 327 - -
Vvi18g0547 636 Pfam NB-ARC domain 194 399 IPR002182 GO:0043531
Vvi18g0547 636 FunFam Probable disease resistance protein At1g63360 418 504 - -
Vvi18g0547 636 FunFam Probable disease resistance protein At5g66910 333 417 - -
Vvi18g0547 636 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 432 IPR027417 -
Vvi18g0547 636 PRINTS Disease resistance protein signature 370 384 - -
Vvi18g0547 636 PRINTS Disease resistance protein signature 273 287 - -
Vvi18g0547 636 PRINTS Disease resistance protein signature 199 214 - -
Vvi18g0547 636 Gene3D - 159 327 IPR027417 -
Vvi18g0547 636 Gene3D - 11 120 - -
Vvi18g0547 636 PANTHER DISEASE RESISTANCE PROTEIN RP 54 618 IPR044974 GO:0006952
Vvi18g0547 636 Gene3D - 333 417 IPR042197 -
Vvi18g0547 636 Pfam Rx N-terminal domain 6 97 IPR041118 -
Vvi18g0547 636 SUPERFAMILY L domain-like 494 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0547 Vvi-Chr18 5499153 5501063 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0547 196 394 WRKY Transcription Factor Family AT5G45050 26.291 5.11e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0547 - - vvi:100854887 1263.44