Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0546 ATGATGTGGGACGACTGGAATAACTGGGACGACGACGTTTCGCAACCCCAAGAAGAGCCACCCCCTGATTCTCCCCTCAATTTCGATTTCCTTTCTCTTCTATCCAAGCCCAAGGATTACTATGGGATGTTGGAGGTGGATTATGATGCTACGGAGGATGCCATCAGGTCCAATTTTATCCGTCTCGCATTGAAATGGCATCCAGACAAGCAGAAAGATCCGGACAACTCCACTATAAGATTTCAGGAGATAAATGAGGCTTACCAGGTTTTGAGTGATCCTGCCAAAAGGAGGGAATATGACAAGAGAAAAGGATTGCTACATGTCTATGATTATAACATGATTGAATACCTGGATCGTAATAAAGGTCTTATATTAACATGCAATGGCCTTGGGATCAGGCATTCAATATGGTGA 417 0.4365 MMWDDWNNWDDDVSQPQEEPPPDSPLNFDFLSLLSKPKDYYGMLEVDYDATEDAIRSNFIRLALKWHPDKQKDPDNSTIRFQEINEAYQVLSDPAKRREYDKRKGLLHVYDYNMIEYLDRNKGLILTCNGLGIRHSIW* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0546 138 ProSitePatterns Nt-dnaJ domain signature. 81 100 IPR018253 -
Vvi18g0546 138 PRINTS DnaJ domain signature 41 59 IPR001623 -
Vvi18g0546 138 PRINTS DnaJ domain signature 76 96 IPR001623 -
Vvi18g0546 138 PRINTS DnaJ domain signature 59 74 IPR001623 -
Vvi18g0546 138 Pfam DnaJ domain 39 101 IPR001623 -
Vvi18g0546 138 ProSiteProfiles dnaJ domain profile. 39 104 IPR001623 -
Vvi18g0546 138 Gene3D DnaJ domain 31 114 IPR036869 -
Vvi18g0546 138 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 2 138 - -
Vvi18g0546 138 SMART dnaj_3 38 96 IPR001623 -
Vvi18g0546 138 FunFam Chaperone protein DNAj, putative 31 119 - -
Vvi18g0546 138 SUPERFAMILY Chaperone J-domain 34 105 IPR036869 -
Vvi18g0546 138 MobiDBLite consensus disorder prediction 1 25 - -
Vvi18g0546 138 CDD DnaJ 39 93 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0546 Vvi-Chr18 5485388 5489984 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0546 32 112 C2H2 Transcription Factor Family AT1G74250 36.047 2.00e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0546 - - vvi:100248914 271.166