Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0542 ATGGCACCCAGTTTCGACTGTGCAGCCTCAAGCCTTCTGTGTGGAGAGGACAACAGCAGCATCTTTGATGATGCTGATTATGGCGCTGCGGCGGAGGAGTTTGAGACTGCATGGCATCATCAGAATCATCGAAGTCGTAATCAAGAGAAGAGCTTTAATGGCGGAGAGTTTTTGATTGGGTTGCCAGTGCAGAGCGATGAGTGTTTGGCTTTGATGATTGAGAAGGAGTCCCAGCATTTGCCTGCTGCTGATTACTTGATGAGGCTCAGGAGTGGGGATTTGGACATTGGGTCTAGACAGGACGTTGTTGGTTGGATTGCAAAGGCTCACGCCCATTTCGGTTTTGGACCCCTGTGTGCATACTTGGCTATAAACTACCTGGATCGGTTCCTTTCCACCTATGAATTGCCTAAAGGTAAAGCTTGGATGGCACAGTTGTTGGCTGTGGCTTGCTTGTCCCTTGCAGCCAAAATGGAGGAGAATGAAGTTCCTTTGTGTCTTGATTTGCAGGTGGCCGAATCGAGATTTGTGTTTGAAGCCAGAACCATACAGAGAATGGAGCTTCTGGTGCTGAGGACATTGAAGTGGAGAATGCAAGCCGTGACCCCTTTCTCCTTCGTAGACTATTTTCTCCGCAGGATCAATGATGATGAATTCCCGGCCAGAACTTCAATCTTGCTGTCAATTCAACTCATATTAAGCACAGTAAAAGGGATTGACTTCTTGGAATTCAGGCCTTCTGAGATTGCAGCAGCAGTGGCAATATCTATTGCAGGAGAAACCCAAACAGTGGACATTGAGAAGGCCATTTCTGTTGTCATTGAACCTATAGAAAAGGAGAGAGTGCTCAAGTGTATTGAGCTGATGCATGATTTATCATTGATTAGTGGGTCTGTGAAGCGTTCTAGTACTGCTGCTTCAGTCCCTTCTGTGCCCCACACCCCAATTGGTGTGCTGGATGCTGCATGCTTGAGCTATAAAAGTGATGATACAACAGTTGGATCATGTGCAAATTCTTCACATAACAAAAAGAGGAAGCTAAACGCACCCCCTGAAGTGGAGCTATAA 1068 0.4654 MAPSFDCAASSLLCGEDNSSIFDDADYGAAAEEFETAWHHQNHRSRNQEKSFNGGEFLIGLPVQSDECLALMIEKESQHLPAADYLMRLRSGDLDIGSRQDVVGWIAKAHAHFGFGPLCAYLAINYLDRFLSTYELPKGKAWMAQLLAVACLSLAAKMEENEVPLCLDLQVAESRFVFEARTIQRMELLVLRTLKWRMQAVTPFSFVDYFLRRINDDEFPARTSILLSIQLILSTVKGIDFLEFRPSEIAAAVAISIAGETQTVDIEKAISVVIEPIEKERVLKCIELMHDLSLISGSVKRSSTAASVPSVPHTPIGVLDAACLSYKSDDTTVGSCANSSHNKKRKLNAPPEVEL* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0542 355 Gene3D - 82 199 - -
Vvi18g0542 355 Pfam Cyclin, C-terminal domain 201 297 IPR004367 -
Vvi18g0542 355 CDD CYCLIN_AtCycD-like_rpt2 201 289 - -
Vvi18g0542 355 CDD CYCLIN_AtCycD-like_rpt1 99 196 - -
Vvi18g0542 355 Gene3D - 71 287 - -
Vvi18g0542 355 ProSitePatterns Cyclins signature. 99 130 IPR006671 -
Vvi18g0542 355 PANTHER CYCLINS 65 298 IPR039361 -
Vvi18g0542 355 SMART cyclin_7 104 192 IPR013763 -
Vvi18g0542 355 SUPERFAMILY Cyclin-like 64 198 IPR036915 -
Vvi18g0542 355 MobiDBLite consensus disorder prediction 332 355 - -
Vvi18g0542 355 FunFam D6-type cyclin 195 287 - -
Vvi18g0542 355 SUPERFAMILY Cyclin-like 183 295 IPR036915 -
Vvi18g0542 355 SMART Cyclin_C_2 201 327 IPR004367 -
Vvi18g0542 355 FunFam D2/4-type cyclin 82 194 - -
Vvi18g0542 355 Pfam Cyclin, N-terminal domain 69 198 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0542 Vvi-Chr18 5463189 5465322 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0542 9 337 Core Cell Cycle Gene Families AT2G22490 45.906 2.90e-87 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0542 K18810 - vvi:100247298 684.871