Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0540 ATGGAAAAGGACTGTGGATCCTGGCTTCCCCATCAGCATCCTGGCTGGCTGTCACCCGATTTGAATACTTTGAGTGCTCCACTGGGGCTTGAACTGGAGCAGCAAAATATTATTTCTGCTTACATGAACCCTTGCCCCAATTTGGTTCCCACAAGTGGGTCTTTGACAGCGCACACATTTTCTGTGCTGCCTCATTCACGCCCCAGCCAACCAAATGAACCTCATGGATGGTTTTACTGTTTGCCCCGTTTCCGGCAGGCCTTCACACATGCATCCAATTCCATTCTAAAAGAGAAACTCCCTGCCGGCCCTTATGGGAACTCTAGGGTGGTCAACGCACCCAATGTTATCTCTGAGTGTGCTCAGAAGAGATTCCTTGTTTTTGATCAGTCAGGTGATCAAACAACATTGGTTTTTAGTTCTGTGATTGGTACTCCTGGCCAGTGCTTGACTTCTTGGAGCCCAAAACCTTCTGGTGCTCATAATTTGAGTGGGGGAGAGGAAGGAACAAAACGAGATCTGATTTATCACCAGGGACCAATTCTGACTGATGAATCTAATGAAAATGGTGGAACTGATGTGCAGAGTGAGATGCATGAGGATACAGAGGAGCTCAATGCCTTGCTCTATTCGGATGATGAATACAGTTACTCTGAAGATGATGAAGAAACAAGCACTGGTCATTCACCTAGCACAATGACTGTGTATGATAGACAAGAATGGCTTGAGGGGGAAGCAGAAGAAGTCGCTAGTTCGGATGGGTCAAATAAGAGGAGAAAATTATTCAACGGAGATTTTAATGTACCATCTCTTATGGACACTGCAAGTTCTGCAAAGCCCGACAATTCCCTCGAGTATGAGGATGATGCTGAATCTAGTTGCGCCGATGGCAACAATCCAGAGCCAGGAGAAATTCAATCTTTTTCAGGCAACAAGAGGTCGAGGAAAGACAGAATACGTGAAACAGTGAACATTCTCCAGAGCTTGATTCCTGGCGGGAAGGGCAAGGATGCAATTGTGGTCCTTGATGAAGCTATCCATTACTTGAAATCATTGAAGCTCAAAGCGAAAGCTTTAGGACTTGATACTCCTTGA 1095 0.4566 MEKDCGSWLPHQHPGWLSPDLNTLSAPLGLELEQQNIISAYMNPCPNLVPTSGSLTAHTFSVLPHSRPSQPNEPHGWFYCLPRFRQAFTHASNSILKEKLPAGPYGNSRVVNAPNVISECAQKRFLVFDQSGDQTTLVFSSVIGTPGQCLTSWSPKPSGAHNLSGGEEGTKRDLIYHQGPILTDESNENGGTDVQSEMHEDTEELNALLYSDDEYSYSEDDEETSTGHSPSTMTVYDRQEWLEGEAEEVASSDGSNKRRKLFNGDFNVPSLMDTASSAKPDNSLEYEDDAESSCADGNNPEPGEIQSFSGNKRSRKDRIRETVNILQSLIPGGKGKDAIVVLDEAIHYLKSLKLKAKALGLDTP* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0540 364 MobiDBLite consensus disorder prediction 180 200 - -
Vvi18g0540 364 PANTHER TRANSCRIPTION FACTOR BHLH145 8 362 IPR037546 -
Vvi18g0540 364 Gene3D - 310 359 IPR036638 GO:0046983
Vvi18g0540 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 313 359 IPR036638 GO:0046983
Vvi18g0540 364 MobiDBLite consensus disorder prediction 269 317 - -
Vvi18g0540 364 CDD bHLH_AtSAC51_like 309 360 - -
Vvi18g0540 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 303 352 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0540 47 357 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50010 33.125 8.24e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0540 - - vvi:100241943 722.62