Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0535 ATGGGCTACCTCTCTTGCAATGCAGAGTCCGCAATAGCTACATGCGACCCCTACATCTGGGACAACAAACGGAAACCCTTTCAGATTACCAACTTCTCCTATGCTGATCTTGAATCCGCCACCAATGGCTTCTCCGCTGAGAGTTTTCTCGGTAAAGGCAGCTATGGCAGCGTTTACAGAGCCCTTCTCCACCACGGTAAGCTCATCGCCGCCGTCAAGAGAGCCATAGGCCCTCAGCAACACAATAACAAGTGTGCCAGCTGCACCAACTGCTCCACCTGCTCCAATTCCACCAGTCCGGCTGATAACGAGATCGAGATACTGTCGAGAGTTCGAAATCCTAGACTGGTGAATCTATTAGGCTTCAGTGTGGACAGGAACGAGAAGAAATTGATTGTGGTTGAGTTCATGCCCAATGGGTCTTTGTATGATATTCTTCATTCGAGTCCTAGACCACCCAGTTGGAGGCGGCGAGTCAGGTGGGCCTCGCAGATCGCGAAGGCGGTGGAGTCGCTGCACTCGTCGAATCCGCCGGTGATTCACAGAGACATAAAGTCTTCCAACGTTTTGCTGGATGGGAAATGGAATGCAAGGCTTGGAGACTTTGGGCTGGCTTTGAGGGGACACGTGGAGGATGTGAGGGTGAGGTGTACGCCACCCGCGGGGACGTTAGGATACCTGGACCCGGGCTATCTTGCGCCGGGGGATTTGAGTACCAAGAGCGACGTCTTCAGCTTTGGGATCTTGTTGCTGGAGATGATCAGCGGCCGCAACGCCATCGACGTCAACTACAGTCCACCCTCGGTGGTGGACTGGGCCGTGCCCTTGATCAAGCACACCAACTTCTCCGCAATCTGTGATCCCCGCATCGGAGAGCCGGAGGATCCTCGCGTGATCCGGCAGCTGGCGGTGTTGGCCGCTCGATGTGTCAGATCAACGGCGGAGAAGAGGCCTGCGGCGACTGAGGTGGTGGACTGCCTCAGAAACGTGAGAAAGATGGTTCAGTCGCCGCCGATCTGGGGTAATGTAAGGAGGCGAGTGCAGAGGCCGTCGAGGTCCCGGCAGATGACACTGGAGGTGTTGGATGGGAGCGGAGAGATGGTGAAGACGAAGAAACTTGGAAGCAGAAGGAACAGGAAGGTATCCAGTGTTCCGGGTGCAGAGGAGGGGAATGAAGCGGTTGGTTCGTTGAGTGATGGTGTGATTAGATCCAAATCAATTGGTTCGGGCAGCGAGATTAAAATGGGTTGGGATCCAAAGAAGAAGCCTGGATTGGTTGTGAAGATGCCTGTTATGAGGCTTGTGAAATCAAGGTCCATGGGGGTCGTACAATCCAAGCGCTTGCTACATTGCCATCAATTTGCCTTTGAACTTGACAAAAGGGCTCATGCATTCAGAGAATTGAGTGAACCCAAGTTGTTGGTGAGTTGGGATAAACAACCCCTGATTCAAAAATGCATCTTAAAGCAAGATACCGCTGTAATTGAATCGAAGGAACCGAATCCGGTGGGCTCGAAGACCCTTTGA 1527 0.5311 MGYLSCNAESAIATCDPYIWDNKRKPFQITNFSYADLESATNGFSAESFLGKGSYGSVYRALLHHGKLIAAVKRAIGPQQHNNKCASCTNCSTCSNSTSPADNEIEILSRVRNPRLVNLLGFSVDRNEKKLIVVEFMPNGSLYDILHSSPRPPSWRRRVRWASQIAKAVESLHSSNPPVIHRDIKSSNVLLDGKWNARLGDFGLALRGHVEDVRVRCTPPAGTLGYLDPGYLAPGDLSTKSDVFSFGILLLEMISGRNAIDVNYSPPSVVDWAVPLIKHTNFSAICDPRIGEPEDPRVIRQLAVLAARCVRSTAEKRPAATEVVDCLRNVRKMVQSPPIWGNVRRRVQRPSRSRQMTLEVLDGSGEMVKTKKLGSRRNRKVSSVPGAEEGNEAVGSLSDGVIRSKSIGSGSEIKMGWDPKKKPGLVVKMPVMRLVKSRSMGVVQSKRLLHCHQFAFELDKRAHAFRELSEPKLLVSWDKQPLIQKCILKQDTAVIESKEPNPVGSKTL* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0535 508 PANTHER OS01G0253100 PROTEIN 28 331 - -
Vvi18g0535 508 Gene3D Phosphorylase Kinase; domain 1 18 136 - -
Vvi18g0535 508 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Vvi18g0535 508 SUPERFAMILY Protein kinase-like (PK-like) 28 344 IPR011009 -
Vvi18g0535 508 MobiDBLite consensus disorder prediction 373 392 - -
Vvi18g0535 508 FunFam Serine/threonine-protein kinase-like protein 137 340 - -
Vvi18g0535 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vvi18g0535 508 FunFam Serine/threonine-protein kinase-like protein 8 136 - -
Vvi18g0535 508 ProSiteProfiles Protein kinase domain profile. 44 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0535 508 Gene3D Transferase(Phosphotransferase) domain 1 137 338 - -
Vvi18g0535 508 Pfam Protein kinase domain 46 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0535 508 SMART serkin_6 44 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0535 Vvi-Chr18 5350610 5352136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0535 32 378 Receptor kinase-like Gene Family AT3G59420 38.810 1.06e-67 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vvi18g0535 Pkinase 4.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0535 - - vvi:100253910 985.711