Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0534 ATGGAATTCGAGGAACACGAAGAACAGGAGGAAGATATGGGGATGGCTGTACAGGCCAGCTATGAATCGGTTGGAAACACGGGCAGGCCCAAAATGGGTAGCGGTGGAGGGGAAGGTGCATCCACCGTCAGAAAAGTCGGGAACAGCAGGTATAGGGAGTGCTTGAAGAATCACGCCGTTGGCATCGGCGGCCACGCTGTAGATGGCTGCGGCGAGTTCATGCCTGCCGGAGACGAAGGAACCCTTGATGGGCTACGGTGCGCCGCGTGCAATTGTCATCGCAACTTCCACCGCAAGGAGAGTGAGGGAGACACTTTATACCACCAATTCTCGCCTTATTACCGAACTCCGGCGGGATACCTCCACGTGGCGCCGTCGCAGTACCGGCCCTTGGCGTTGCCGTCGACGTCGGGAGGTGGAGGCCACAGTAGAGAGGACCAAGAGGACGTATCGAACCCTAGCAGCTCCGGCGGTGGCGGTGGTGGTAGCGGAAGTTTGAAGAAGAGATTTAGGACCAAGTTCACGCAGGAGCAGAAGGACAAGATGCTGGCGTTTGCGGAGACGCTGGGGTGGAGGATCCAGAAGCACGACGAAGCTGCTGTGCAGCAGTTCTGTCAAGAGACCTGTGTGAAACGCCATGTTCTCAAGGTCTGGATGCACAATAACAAGCACACCCTTGGTAAGAAACCCTAA 693 0.5671 MEFEEHEEQEEDMGMAVQASYESVGNTGRPKMGSGGGEGASTVRKVGNSRYRECLKNHAVGIGGHAVDGCGEFMPAGDEGTLDGLRCAACNCHRNFHRKESEGDTLYHQFSPYYRTPAGYLHVAPSQYRPLALPSTSGGGGHSREDQEDVSNPSSSGGGGGGSGSLKKRFRTKFTQEQKDKMLAFAETLGWRIQKHDEAAVQQFCQETCVKRHVLKVWMHNNKHTLGKKP* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0534 230 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 51 100 IPR006456 -
Vvi18g0534 230 MobiDBLite consensus disorder prediction 1 42 - -
Vvi18g0534 230 NCBIfam homeobox domain, ZF-HD class 167 223 IPR006455 -
Vvi18g0534 230 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 50 100 IPR006456 -
Vvi18g0534 230 SUPERFAMILY Homeodomain-like 154 228 IPR009057 -
Vvi18g0534 230 Gene3D - 152 228 - -
Vvi18g0534 230 MobiDBLite consensus disorder prediction 131 167 - -
Vvi18g0534 230 FunFam Zinc-finger homeodomain protein 2 160 228 - -
Vvi18g0534 230 Pfam ZF-HD protein dimerisation region 49 101 IPR006456 -
Vvi18g0534 230 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0534 Vvi-Chr18 5343830 5344522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0534 1 226 ZF-HD Transcription Factor Family AT4G24660 54.506 7.01e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vvi18g0534 ZF-HD_dimer 6.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0534 - - vvi:100248818 463.766