Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0527 ATGGCGTTGATGAGGAAGAGGAAAGGAAGTGAAACTGATACATGTTTGAATCAATCTGGGGTTTTGTCATCATATCCTCGCAATTCTGGATCGGATTTGTCAGTTGTTAGGTCCCATTTTTCATTGGAAGATTATGCAAGGTTGAGGAAGAAGTGCAAAGAAGATGTGGGTAAAGTTGAACCTGTTGGTTCGTGTAAAAGTCGACTCACTGGTGCTGCCACCGTGCCTCCATGTGGGATCTCGTCATTGGTTCCATCTGGAAGAGGTCTTAAGAGGAAGATAGGGTGCATTGATGTGGCTACACAAATGGGTAGGAAGAACAAAATTGAGAATGACTATGCTTTGGGTGAAACAATTGGTCAGGGTAAATTCGGGTCAGTTTGGTTGTGCAGGAGTAGGATTAGTGGAGTTGAATTTGCATGTAAGACCCTGAAGAAGGGAGAGGAAACGGTTCATCGGGAAGTAGAAATAATGCAGCATTTATCTGGCCATGCTGGTATTGTGACATTGCGGGCAGTGTACGAGGATCCTGAATGCTTTCATCTTGTGATGGAATTGTGCTCTGGGGGGCGATTGGTGGATCAGATGGTAGAAGAAGGGCAGTATTCAGAGCACCGGGCTGCTAATATATTAAGGGAATTGATCTTGGTGATCAAGTATTGTCATGATATGGGGGTTGTACACAGAGACATAAAGCCCGAGAATATTCTTCTTACAGCTGCAGGAAAGTTGAAACTTGCTGATTTTGGCTTAGCCATGAGGGTCGCAAAGGGTCAAAGCTTGTCTGGTTTGGCTGGAAGTCCTGCATATGTTGCTCCAGAAGTTTTATTAGGGAATTATTCAGAGAAAGTTGATATCTGGAGTGCTGGTGTCCTCCTACATGCTCTCTTGGTTGGTATGCTCCCTTTCCGAGGTGATTCATTACAAGCGGTCTTTGAGGCCATCAAGAATGTAAAGCTTGATTTCCACACGGGAATATGGGAGTCAATATCTAAACCTGCACGTGATCTGATTGAGCGAATGCTCACAAGGGATGTTTCTGCAAGGATAACAGCAGAAGAAGTACTAAGACATCCATGGATTTTGTTCTTCACTGAGCGTACATTAAATACACTGTCCATCAAGTCCAAAGTGAAGAGCCAACAGGTTGCATCTGAGCTGTCAGATAGACGTAGGATACGAGGTGGCCCTTTAGGTGATGCTTTGGGTCCAGTTTCTTTTTCTGGAAGTTCAAGTTGTAAGTCAGAAGACCAGGATGACGCTGGCTTAGTTGATGCACTGGCAGTGGCAATTTCACATGTGAGGATCTCCAAACCAAAGAGGAGCAGACTCTGTGAGCCAGCCTGCCCAGTACAGCAGCAGTGTTCTTCTAACATGAAGGCTAACAATCTATGTAAAGCATTTTGA 1407 0.4463 MALMRKRKGSETDTCLNQSGVLSSYPRNSGSDLSVVRSHFSLEDYARLRKKCKEDVGKVEPVGSCKSRLTGAATVPPCGISSLVPSGRGLKRKIGCIDVATQMGRKNKIENDYALGETIGQGKFGSVWLCRSRISGVEFACKTLKKGEETVHREVEIMQHLSGHAGIVTLRAVYEDPECFHLVMELCSGGRLVDQMVEEGQYSEHRAANILRELILVIKYCHDMGVVHRDIKPENILLTAAGKLKLADFGLAMRVAKGQSLSGLAGSPAYVAPEVLLGNYSEKVDIWSAGVLLHALLVGMLPFRGDSLQAVFEAIKNVKLDFHTGIWESISKPARDLIERMLTRDVSARITAEEVLRHPWILFFTERTLNTLSIKSKVKSQQVASELSDRRRIRGGPLGDALGPVSFSGSSSCKSEDQDDAGLVDALAVAISHVRISKPKRSRLCEPACPVQQQCSSNMKANNLCKAF* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0527 468 SMART serkin_6 113 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0527 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Vvi18g0527 468 MobiDBLite consensus disorder prediction 394 414 - -
Vvi18g0527 468 PANTHER SERINE/THREONINE-PROTEIN KINASE 100 382 - -
Vvi18g0527 468 FunFam Serine/threonine-protein kinase PEPKR2 104 423 - -
Vvi18g0527 468 Gene3D Transferase(Phosphotransferase) domain 1 104 394 - -
Vvi18g0527 468 Pfam Protein kinase domain 113 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0527 468 SUPERFAMILY Protein kinase-like (PK-like) 110 380 IPR011009 -
Vvi18g0527 468 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
Vvi18g0527 468 CDD STKc_CAMK 112 360 - -
Vvi18g0527 468 ProSiteProfiles Protein kinase domain profile. 113 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0527 Vvi-Chr18 5267224 5271771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0527 103 361 EF-hand Containing Proteins AT2G17290 45.556 1.89e-80 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi18g0527 Pkinase 8.6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0527 - - vvi:100255718 920.228