Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0509 ATGTTTCCAATTTTCAATTTCAATGGCGTCGCTTGCCTGCTCAACATCTCTCTTCTGCTGCCCCTGTTATCCTGCGCAACCGCTCAGACCGCCGCAGAGCAGTCTCCCCCGCCCTCCGAACTCATGTCGTTAGCGCAGAAGTTCAACCCCTCCATGGCTATTGTAATGATCGCCATCGTAAGCGCCTTCTTCTTTATGGGGTTTTTCTCAGTTTACCTCCGCCAGTGTATCGAACGCCGCGTCCGCGGACGATTCAACACGGAAATCGTTGGAATTGGCGGACATCGCTCGTGGATGGCGGCTCGTGGTCTGAACAGCTCGGATATCGAGAGGTTTCCCACTTTCGTATACTCGGCGGTAAAGGCGCACAAGATAGGGAAAGAGGGGCTGGAATGCGCGGTGTGCCTAAACGAGTTCGAAGACGATGAAACGCTGCGTTTGCTCCCCAAGTGCAATCACGTGTTTCACTCCGACTGTATCGATCTTTGGTTGGCCTCTCACGTCACTTGTCCTGTTTGTCGTGCCAACCTTACTCCCAAACCAGGTGAAAAATTCTGCGCTCCCGTACCCATTTTTGGGCCGGAAACTGAATCCGATGAATCGGACACCAGAGTAGAGATCGTTGAGACGCCAAACCAAGTTCCGATTGCCGTGGACGCGCAGTCCCCAGATGTAATGAACCATGGCCGGGACACGCCGAATCGTCCGCCAAGATCAAGATCGATAAGGGCACGAATCACTGGAATGTTCCCGCGTTCGCACTCCACGGGTCATTCGCTGATTCAACCGGGTGAGAATCGCGAGAGGTTTACGCTCAGATTACCGGAGGAGATAAGAAATCAGATCATGAATACGAGTTTAAGTCGTACAAAGAGTTGGGTAGCATTGCCGGGTGTGCAGAGCTCGAAAAGGGGATACAGGGCCAATAGTGTGGGAAGTCTTCGGGGAAAGACCTATTTTAACTACGAGCAATTCAACGGGGAGGTCAGGGCGGAACGGTTGGGTTTTTCCATGACGCCACCTTTCGTCCCAAGGACAGGTTCCTCCCACGCCCGCTCGCCCCAGGGCTGCGAGGGATCTTTGACTCCTAAGACTCTCTTCAGGTCCCTAAAATCCCCCTTCGATCGTCTTTTTCTTCCGGGAGGCAGCGTTGGTGAACGCCTATCTGATAGACCCCGCTCCGATAGTCCCGTTTAG 1197 0.5347 MFPIFNFNGVACLLNISLLLPLLSCATAQTAAEQSPPPSELMSLAQKFNPSMAIVMIAIVSAFFFMGFFSVYLRQCIERRVRGRFNTEIVGIGGHRSWMAARGLNSSDIERFPTFVYSAVKAHKIGKEGLECAVCLNEFEDDETLRLLPKCNHVFHSDCIDLWLASHVTCPVCRANLTPKPGEKFCAPVPIFGPETESDESDTRVEIVETPNQVPIAVDAQSPDVMNHGRDTPNRPPRSRSIRARITGMFPRSHSTGHSLIQPGENRERFTLRLPEEIRNQIMNTSLSRTKSWVALPGVQSSKRGYRANSVGSLRGKTYFNYEQFNGEVRAERLGFSMTPPFVPRTGSSHARSPQGCEGSLTPKTLFRSLKSPFDRLFLPGGSVGERLSDRPRSDSPV* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0509 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 180 IPR013083 -
Vvi18g0509 398 Pfam Ring finger domain 131 174 IPR001841 -
Vvi18g0509 398 CDD RING-H2_EL5-like 131 174 - -
Vvi18g0509 398 SUPERFAMILY RING/U-box 124 181 - -
Vvi18g0509 398 SMART ring_2 132 173 IPR001841 -
Vvi18g0509 398 FunFam E3 ubiquitin-protein ligase ATL6 94 180 - -
Vvi18g0509 398 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Vvi18g0509 398 PANTHER RING FINGER DOMAIN-CONTAINING 33 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0509 Vvi-Chr18 5020555 5021751 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0509 22 346 Rapid Response to Elicitors AT3G05200 41.692 2.75e-71 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0509 K10664 - vvi:100259131 788.875