Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0508 ATGGCCTTAGAAGCTGTAGTTTTCCCAACATTAGATCCATTCAGTTATGGCTGCAAGGGAGGCGGATGGAGCTATGACTTTGATCTACAAGAAGAAGATAAAGCTCTTCTTGGGATTCTCGGCAATAACACAGAGCCAGGCTCCCATGGAAATTGGGACTCCTCATCTCCTTCGGTGATGCAAAATGCGATGGAGTGGGATCATAATTCTTCGCCCGAGGCATGCACAGGCGATCAATCTCTTGCCGGCGTGTTCCCTCCGACTGAAGAGCCTCCATCCACTTCCACAACAGGTCGGCGCAAGAGACGACGCACCAAAAGCTGCAAGAACAAAGAAGAAGTGGAGAATCAAAGGATGACCCACATTGCAGTGGAGCGCAACCGCCGGAAACAGATGAATGAGTATCTCGCCGTGCTCCGATCTTTGATGCCGCCTTCTTACACTCAAAGGGGAGATCAAGCATCAATCATTGGAGGCGCCATTAATTTCGTGAAGGAGCTGGAGCAGCTACTGCAGTCCCTGGAGGCCGAGAAGAGCAGTAAGCAACAAACCAACAATTCGGTCTCTTCCCCCTTTTCCAATTTCTTCACGTTCCCGCAGTACTCAACTCGTGCAACACACTGCACCAAAGACTCTATGATGGGTGACAACCGGTGGGCTGTGGCCGACATAGAAGTCACCATGGTGGAGAGCCACGCCAATATAAAGATACTTTCTAAAAGAAAAACTAAACAGCTCTTGAAGATAGTGGCCGGGTTTCAGAGTCTTAGCCTCACCATTCTCCACCTTAATGTTACTACATTTGATCAAATGGTGCTATATTCACTCAGTGTGAAGGTTGAGGAGGAGTGCCAGCTGACTACAGTCGATGAAATCGCGGCAGCCGTTAATCAGATGCTAAGAAGAATTCAAGAAGCTGCTGCTTTGAATTGA 933 0.4855 MALEAVVFPTLDPFSYGCKGGGWSYDFDLQEEDKALLGILGNNTEPGSHGNWDSSSPSVMQNAMEWDHNSSPEACTGDQSLAGVFPPTEEPPSTSTTGRRKRRRTKSCKNKEEVENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYTQRGDQASIIGGAINFVKELEQLLQSLEAEKSSKQQTNNSVSSPFSNFFTFPQYSTRATHCTKDSMMGDNRWAVADIEVTMVESHANIKILSKRKTKQLLKIVAGFQSLSLTILHLNVTTFDQMVLYSLSVKVEEECQLTTVDEIAAAVNQMLRRIQEAAALN* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0508 310 Gene3D - 107 185 IPR036638 GO:0046983
Vvi18g0508 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 167 IPR011598 GO:0046983
Vvi18g0508 310 PANTHER MAX DIMERIZATION, MAD 69 307 - -
Vvi18g0508 310 Pfam Helix-loop-helix DNA-binding domain 117 168 IPR011598 GO:0046983
Vvi18g0508 310 FunFam Basic helix-loop-helix transcription factor 107 182 - -
Vvi18g0508 310 MobiDBLite consensus disorder prediction 67 116 - -
Vvi18g0508 310 Coils Coil 164 187 - -
Vvi18g0508 310 SMART finulus 122 173 IPR011598 GO:0046983
Vvi18g0508 310 CDD bHLH_AtFAMA_like 119 191 - -
Vvi18g0508 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 188 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0508 Vvi-Chr18 5009725 5010968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0508 1 280 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 53.000 1.59e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi18g0508 HLH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0508 - - vvi:100259155 576.244