Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0507 ATGGCGATGAAGCATAGAAAGCTCTTCCCGACGCAAACCGCAACGAATCAGAGTGTGGACTGTCTAGATTTCTGTGACTCGACATGTCCTTACAACTGCTACATTTATCCAGACTCCTTGATTCCCCCCCCACCACCAGCATCCCCACGTCCACCAACTCTCTCCACCCTTGATCAGAATGATTCCCCCAACATCTCACCCTACGTGATCATCACAGTTGCCTTACTAGCGGGCTTCTTCCTTCTAGTCTGTTTCAACGCCATCATAGTCAAGTACTGTTGTGGTTGGAGAAGAAGAAATCGCTCTCCACCATCTGAATCAGACGGCAGAGACGAAGAGTTTCTTGATGAGAATCGAGGCCCGGCAATCGACCATCCCATCTGGTTTATCACCACCGCTGGTCTGCAACAAGCGATCATTAATTCAATTACCGTCTGCAAGTATAAAAGAGGTGAGGGCTTGATTGAAGGGACCGAGTGTTCGGTTTGTCTGAGTGAATTTCAGGAAGATGAAACTCTTCGGTTGCTACCCAAGTGTAACCATGCTTTTCACATCCCTTGTATAGATACATGGTTGAGCTCACACACCAATTGTCCCTTATGTCGTGCACGTATTATCTCTGACATTGTCAACCCTCCTCTGGAATCAAATGATCAAAATTCTCGTAGTTTGGGTCCAAATGAACAGACCCAGATGGAGAATTCTAGTAACGATACTGAATTGGATAACAATCTGGTGAGGAGTAGGGGGGTTTATGAAAGTACGGTTGGGAGAGGGGGTACAGGCGAATTACAGATTCTGGATGACGAAAGAACTTCAAAGGAGGGTGTGAACTCCAATGGGGATGTTGTTCTTGAGGTAAATGGCAATTCTGCTAATAATCATGTCGTGGATAGTGAGATACAACCAGTGAGGAGGTCTGTCTCTATGGATTCTTCTTCAGCTGCAACTATCTTTTTTGGTTTGGCTAAATTTCACGCAGATGAATCCAAAGGGAATTGGGTTGATGAGACTATGGATGGGCGAAAATTTGATTCAGGTAGCGTTCCAAAGAGGGATGTTGCATATACAAGCACCTTCAGACAGATGGGGAGTCCTTCCATTGCGCAGTGTTTGCATAAAGGCCCTATTTCAATGAAAAGGTTGAGTTGGAACGAGAGGCCAACCCTTCAATTATGGCGGGACGGGTTAGAGAGGGCTGATGGGTTGGGTCAATAA 1218 0.4598 MAMKHRKLFPTQTATNQSVDCLDFCDSTCPYNCYIYPDSLIPPPPPASPRPPTLSTLDQNDSPNISPYVIITVALLAGFFLLVCFNAIIVKYCCGWRRRNRSPPSESDGRDEEFLDENRGPAIDHPIWFITTAGLQQAIINSITVCKYKRGEGLIEGTECSVCLSEFQEDETLRLLPKCNHAFHIPCIDTWLSSHTNCPLCRARIISDIVNPPLESNDQNSRSLGPNEQTQMENSSNDTELDNNLVRSRGVYESTVGRGGTGELQILDDERTSKEGVNSNGDVVLEVNGNSANNHVVDSEIQPVRRSVSMDSSSAATIFFGLAKFHADESKGNWVDETMDGRKFDSGSVPKRDVAYTSTFRQMGSPSIAQCLHKGPISMKRLSWNERPTLQLWRDGLERADGLGQ* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0507 405 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Vvi18g0507 405 SUPERFAMILY RING/U-box 153 212 - -
Vvi18g0507 405 PANTHER RING-H2 FINGER PROTEIN ATL16 49 330 IPR044600 GO:0016567|GO:0016740
Vvi18g0507 405 SMART ring_2 160 201 IPR001841 -
Vvi18g0507 405 CDD RING-H2_EL5-like 159 202 - -
Vvi18g0507 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 208 IPR013083 -
Vvi18g0507 405 Pfam Ring finger domain 159 202 IPR001841 -
Vvi18g0507 405 FunFam RING-H2 finger protein ATL54 135 208 - -
Vvi18g0507 405 MobiDBLite consensus disorder prediction 212 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0507 Vvi-Chr18 5000656 5003505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0507 4 240 C3H Transcription Factor Family AT1G72220 45.353 5.25e-59 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0507 - - vvi:100854240 773.467