Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0502 ATGGCACTACTTCGGCATCTATGCTTTCCATCGACGACCTCGTTTCTAACACCTCAACCACTCCAGAAACCTCTACATTCTATTCTCTCTTTCTCTTCTTCTTTCTCTCCTCTCTCTCACGCCCTTCCACTCCGAACCACAAGAAGAATCAACCTCTTCCACGTCTCTGCTTCAGCCCAAACTCAATCGCCTCCTCCTGCTTCTCCTTCTACTGCTGTTACCGTTGACACCCCACAGAATGACGAAGAAGAAGAATTTTCTCGAACAAGGTTGATAGCACAGAACATCCCCTGGACTTGCACTGCCCAAGATATCCGGTCTCTGTTCGAGAAGTACGGCACCGTGTTAGACGTTGAGCTTTCGATGCATAACAAAACCAGAAACAGGGGTCTGGCGTTCATCTCAATGGGCTCACCCGAGGAGGCTCTTGCGGCTCTCTCCAATCTCGAATCGTATGAATTAGAAGGCCGTGCTATAAAGGTTAATTATGCCAACCCCCAAAAGAAGAAACCTTCTTCTCCTATACAACACAAGCCAGTGACACCATACAACCTTTTTATAGCAAATTTGCCATACCAGGCAAGGGCTAAAGATCTTAGGGAGTTCTTTAGTTCTGGAAACTGTAATGTTGTCTCTGCAGAAGTTATTTTTCATGAAAATCCTAGACGATCCTCTGGGTATGGATTTGTTTCTTTTGGTTCCAAGGAAGAGGCAGACACCGCACTTTCTTCTTTCCAGGGACAGATGTTTATGGGAAGGCCACTTCGAGTTGCTCGTAGTAGAAGATTTGTGAAACGAGAAAATAAAATGAGTGACCAGACTGAAGATGTAGCAAACCCATTGAACTCCAATTCTGAGCAATCAGGAGAAGGTGATGACATCTGA 885 0.4542 MALLRHLCFPSTTSFLTPQPLQKPLHSILSFSSSFSPLSHALPLRTTRRINLFHVSASAQTQSPPPASPSTAVTVDTPQNDEEEEFSRTRLIAQNIPWTCTAQDIRSLFEKYGTVLDVELSMHNKTRNRGLAFISMGSPEEALAALSNLESYELEGRAIKVNYANPQKKKPSSPIQHKPVTPYNLFIANLPYQARAKDLREFFSSGNCNVVSAEVIFHENPRRSSGYGFVSFGSKEEADTALSSFQGQMFMGRPLRVARSRRFVKRENKMSDQTEDVANPLNSNSEQSGEGDDI* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0502 294 MobiDBLite consensus disorder prediction 57 83 - -
Vvi18g0502 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 160 IPR000504 GO:0003723
Vvi18g0502 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 256 IPR000504 GO:0003723
Vvi18g0502 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 262 IPR000504 GO:0003723
Vvi18g0502 294 FunFam RNA-binding protein CP33, chloroplastic 58 169 - -
Vvi18g0502 294 SUPERFAMILY RNA-binding domain, RBD 77 175 IPR035979 GO:0003676
Vvi18g0502 294 MobiDBLite consensus disorder prediction 274 288 - -
Vvi18g0502 294 FunFam RNA-binding protein CP33, chloroplastic 170 274 - -
Vvi18g0502 294 SUPERFAMILY RNA-binding domain, RBD 173 267 IPR035979 GO:0003676
Vvi18g0502 294 Gene3D - 54 169 IPR012677 -
Vvi18g0502 294 Gene3D - 170 276 IPR012677 -
Vvi18g0502 294 CDD RRM_SF 185 257 - -
Vvi18g0502 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Vvi18g0502 294 MobiDBLite consensus disorder prediction 57 77 - -
Vvi18g0502 294 PANTHER OS02G0815200 PROTEIN 26 261 - -
Vvi18g0502 294 MobiDBLite consensus disorder prediction 266 294 - -
Vvi18g0502 294 SMART rrm1_1 184 258 IPR000504 GO:0003723
Vvi18g0502 294 SMART rrm1_1 90 162 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0502 Vvi-Chr18 4972234 4973844 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0502 91 272 Eukaryotic Initiation Factors Gene Family AT3G16380 24.339 1.99e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0502 - - vvi:100248931 559.681