Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0495 ATGAAGCGCTTCAGTAGCTCTGTTTCTTTGGCTCCTTTGGTCTCCATGTGTTCGCCTAAAGAGGGGAAGAACTCAAAGAATTATCCTGTCTACGATAGTGAATTCCAAGCTATGTTAGATAGTTTTGATGAAGAAGACTGTGCTGAGGAAACTGGACTGATCACTGAGAAGAAAAAGCGATTGAGCTTTGATCAGGTAAAGGCCTTGGAGAGAAGTTTTGAGATTGAGAACAAGCTTGAGCCAGAGCGAAAGGTGAAAATAGCAGAAGAACTGGGCCTAAAACCACGACAAGTAGCGATATGGTTTCAAAACCGCCGAGCACGCTGGAAGACGAAGCAATTGGAGAGAGACTACGGTATTCTTAAAGCCAATTATGATGCTCTGAAGCTTGACTACGAGAGTCTCGAACAAGAGAAAGAAGCTTTAGTCGCAGAGCTAAGAGAGCTGAAAGCAAAGCTCCAAGGCGGAAACATGGAGTTAAATCAATCTGTTAAAGAGGAGGCTCTAGTTTCGGAGTCTGAGAATAATGTTTCAGAGCAGGGTAAGAACAATGGAAATATATCAGGAATCCATGGATTGGGAGACTTCAAAGACGGGTCATCTGATAGTGATTCCAGTGGAGTTTTAAAGAATGAGAGCAATTTCAACGCACAGCTAATGATGTCTCCAGCGTCTTCTTCTTCTCTTAGATTGAACTGTGCTTCTTTGTCATCACCTTCACCAATGAACTGGTTCCCAAGTAAAGCGTTTCAGCATCAGTTTGGGAGAATGGAAGAGCAGAGTTTCTTCAGTGCAGAGGAGCCCTGCAATTTCTTCTGGGGTGATCAAGCCCCCTCTCTTCATTGGTACTTTCCTGATCAGTAA 864 0.4363 MKRFSSSVSLAPLVSMCSPKEGKNSKNYPVYDSEFQAMLDSFDEEDCAEETGLITEKKKRLSFDQVKALERSFEIENKLEPERKVKIAEELGLKPRQVAIWFQNRRARWKTKQLERDYGILKANYDALKLDYESLEQEKEALVAELRELKAKLQGGNMELNQSVKEEALVSESENNVSEQGKNNGNISGIHGLGDFKDGSSDSDSSGVLKNESNFNAQLMMSPASSSSLRLNCASLSSPSPMNWFPSKAFQHQFGRMEEQSFFSAEEPCNFFWGDQAPSLHWYFPDQ* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0495 287 Gene3D - 54 119 - -
Vvi18g0495 287 SUPERFAMILY Homeodomain-like 46 114 IPR009057 -
Vvi18g0495 287 MobiDBLite consensus disorder prediction 169 187 - -
Vvi18g0495 287 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Vvi18g0495 287 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Vvi18g0495 287 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Vvi18g0495 287 Coils Coil 118 159 - -
Vvi18g0495 287 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Vvi18g0495 287 Pfam Homeobox associated leucine zipper 112 154 IPR003106 GO:0006355|GO:0043565
Vvi18g0495 287 MobiDBLite consensus disorder prediction 169 196 - -
Vvi18g0495 287 FunFam Homeobox-leucine zipper protein HOX13 60 109 - -
Vvi18g0495 287 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Vvi18g0495 287 SMART HOX_1 55 116 IPR001356 GO:0003677
Vvi18g0495 287 CDD homeodomain 57 113 IPR001356 GO:0003677
Vvi18g0495 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 43 224 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0495 Vvi-Chr18 4807154 4808574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0495 1 283 Homeobox Transcription Factor Family AT4G40060 39.355 8.59e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi18g0495 Homeodomain 8.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0495 K09338 - vvi:100255823 557.755