Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0489 ATGGAGAAGAAAAACTCATCAGAAACTGCAGGAAAAGCTATAACATGCAAAGCTGCAATTTGCAAAGAGCCAGGAGAGGCTCTTGTGATAGAGGAAATTGAAGTGGCCCCCCCAGAAGCTTGGGAAATTCGGATCAAAATACTATGCACATCCCTTTGTCACACTGATGTGACCTTCTGGAAAATGAATGATGGACCTGAAAGATCCTTTCCGAAAATTTTAGGGCACGAGGCGGTCGGTGTTGTTGAGAGTGTGGGAGAGCATGTGGAGGAAGTGAAAGAAGGAGATTTGGTGGTTCCAGTGTTTCTTCCGAGCTGCAAGGAATGCAGGGATTGCACGTCGACTAAGAGCAACCTTTGCACAAAATTTGGGAGCAAGTTCTACCAGGGTATGCCAAGGGATGGAAGCAGCAGGTTCAGGAATATGAAAGGGGAGGTTGTGCACCATTTCTTGTTTGTTTCAAGCTTTGTGGAATACACGGTTGTGGACATAGCCCATGTTGTGAGGCTCAACCACGAGATTCCTGCGGATAAGGCCTGCTTGCTCAGCTGTGGAGTGTCAACAGGAATAGGAGCGGCATGGAAGGTGGCAGAGGTGGAGGAGGGATCTACTGTAGCCATATTCGGGCTTGGAGCTGTTGGACTTGCGGTCGCGGAGGGGGCAAGGCTCCGGGGAGCTTCAAAGATCATAGGTGTCGATTTGAATCCCGAAAAATTTGAGATAGGAAAGAAATTTGGGGTCACCCATTTCATTAACCCTACTGCCTGTGGCGAAAAAGCAGTGAGCCAGGTGGTGAAAGAGATGACAGATGGGGGTGCTGACTATTGCTTCGAATGCATCGGACTGGCATCCTTGATGAAAGATGCTTTCGATTGTAGCCGAGAGGGGTGGGGCAAAACAGTGATACTGGGAGTAGAGATGCACGGGTCAGATTTGAATGTCAACTCTTCTCAAATTCTCAGAGGCAGAAGTGTCATGGGCTCCCTGTTTGGAGGACTCAAACCAAAGTCTGACATTCCCATTCTCGCAAAAAAATACATAGACAAGGAGCTTAGACTGGATGAATTCATCACACATGAGGTGAACTTCCAGGACATCAACAAAGCTTTTGAATTTCAGAGTCAAGGAAAGAGCATCCGATGCATCATATGGATGGACAAATGA 1164 0.4751 MEKKNSSETAGKAITCKAAICKEPGEALVIEEIEVAPPEAWEIRIKILCTSLCHTDVTFWKMNDGPERSFPKILGHEAVGVVESVGEHVEEVKEGDLVVPVFLPSCKECRDCTSTKSNLCTKFGSKFYQGMPRDGSSRFRNMKGEVVHHFLFVSSFVEYTVVDIAHVVRLNHEIPADKACLLSCGVSTGIGAAWKVAEVEEGSTVAIFGLGAVGLAVAEGARLRGASKIIGVDLNPEKFEIGKKFGVTHFINPTACGEKAVSQVVKEMTDGGADYCFECIGLASLMKDAFDCSREGWGKTVILGVEMHGSDLNVNSSQILRGRSVMGSLFGGLKPKSDIPILAKKYIDKELRLDEFITHEVNFQDINKAFEFQSQGKSIRCIIWMDK* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0489 387 SUPERFAMILY GroES-like 9 196 IPR011032 -
Vvi18g0489 387 Gene3D - 19 380 - -
Vvi18g0489 387 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 75 89 IPR002328 GO:0008270|GO:0016491
Vvi18g0489 387 PANTHER ALCOHOL DEHYDROGENASE 11 383 - -
Vvi18g0489 387 FunFam Alcohol dehydrogenase 6 19 201 - -
Vvi18g0489 387 Pfam Zinc-binding dehydrogenase 212 332 IPR013149 -
Vvi18g0489 387 FunFam S-(hydroxymethyl)glutathione dehydrogenase 189 328 - -
Vvi18g0489 387 SUPERFAMILY GroES-like 336 384 IPR011032 -
Vvi18g0489 387 Gene3D - 189 328 - -
Vvi18g0489 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 174 348 IPR036291 -
Vvi18g0489 387 Pfam Alcohol dehydrogenase GroES-like domain 42 168 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0489 Vvi-Chr18 4760150 4762722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0489 42 371 Monolignol Biosynthesis Gene Families AT2G21730 27.811 6.64e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0489 K00121 - vvi:100245520 761.525