Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0485 ATGGAGCGTTACGAGATTATTAAAGATATTGGATCTGGGAATTTCGGGGTTGCCAGGCTTGTTTCGGATAAGCGCACTAGAGAACTCTTTGCTGTTAAGTTTATTGAGAGAGGCCAGAAGATTGATGAACATGTGCAAAGGGAAATTATGAACCATAGATCATTGATGCATCCCAATATAGTTAGATTCAAGGAGGTCTTGCTGACACCAACTCATCTAGCGATAGTCATGGAGTATGCTGCAGGAGGAGAACTCTTTGGGAGGATATGCAATGCTGGTAGATTCAGTGAGGATGAGGCAAGATTTTTCTTCCAACAACTGATATCTGGAGTCAGTTACTGCCATTCAATGCGAATTTGTCATAGAGATCTTAAGCTGGAAAATACACTCTTAGATGGAAGTACAGCACCACGTGTCAAAATATGTGATTTTGGATACTCAAAGTCATCTGTGTTGCACTCTCAACCAAAATCTACTGTTGGAACACCAGCCTACATTGCACCTGAGGTCCTGTCTAGAAAAGAATATGATGGGAAGCTCTCAGATGTTTGGTCCTGTGGGGTCACTTTATATGTGATGCTGGTTGGGGCGTATCCCTTTGAAGATCCTGATGATCCCAGAAACTTCAGGAAGACAATTGGTAGAATACTTAGCGTCCACTACTCAATTCCAGATTACGTCAGAGTGTCCATTGAGTGTAGACATCTGCTATCTCGAGTTTTTGTGGCAAACCCAGATAAGAGAATAACAATCCCGGAAATTAAGACACATCCGTGGTTCTTAAAGAACTTGCCTATAGAAATGATGGATGGAGGAAGCTGGCAGAAAAATGATGTAAATAACCCATCCCAAAGTGTAGAAGAGATACTATCCATAATACAAGAGGCAAGGAAAACTACCGGAGTGCGCAAGGCGGGTGGGCCTTTTATGGAAGGCAGCATGGATCTTGATGACATTGACGCTGATGAAGATATAGAAACTAGTGGTGATTTTGTGTGTCCATTGTAA 1008 0.4216 MERYEIIKDIGSGNFGVARLVSDKRTRELFAVKFIERGQKIDEHVQREIMNHRSLMHPNIVRFKEVLLTPTHLAIVMEYAAGGELFGRICNAGRFSEDEARFFFQQLISGVSYCHSMRICHRDLKLENTLLDGSTAPRVKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRKEYDGKLSDVWSCGVTLYVMLVGAYPFEDPDDPRNFRKTIGRILSVHYSIPDYVRVSIECRHLLSRVFVANPDKRITIPEIKTHPWFLKNLPIEMMDGGSWQKNDVNNPSQSVEEILSIIQEARKTTGVRKAGGPFMEGSMDLDDIDADEDIETSGDFVCPL* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0485 335 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vvi18g0485 335 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Vvi18g0485 335 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vvi18g0485 335 SUPERFAMILY Protein kinase-like (PK-like) 1 266 IPR011009 -
Vvi18g0485 335 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0485 335 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0485 335 CDD STKc_SnRK2 3 259 - -
Vvi18g0485 335 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0485 335 FunFam Serine/threonine-protein kinase SAPK2 1 79 - -
Vvi18g0485 335 FunFam Serine/threonine-protein kinase SRK2E 80 268 - -
Vvi18g0485 335 PANTHER SERINE/THREONINE KINASE 2 279 - -
Vvi18g0485 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0485 Vvi-Chr18 4733582 4737231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0485 3 301 CBL-interacting serine-threonine protein kinases AT4G24400 40.260 1.77e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vvi18g0485 Pkinase 1.5e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0485 K14498 - vvi:100232851 675.626