Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0482 ATGACGGAAATTTCTGAAACCCACACACGAGGGCTCAAAGATCGCAGAGCGGACGCTCTCGGAGACCTACGTCTCCTTCCCGATGAAATCATACTTGCTATTTTGGCAAGTTTCGGCGCCCGAGATGTTTCACGACTCGCTTGTGTTAGCAGTGTGATGTACATATTGTGCAATGAAGAGCCTCTATGGATGAGTCTATGCCTTAATAATGTAAAGGATCACCTTCAGTACAAAGGCTCCTGGAAGAAAACGGCACTGCTTCAGGAGCATATGCCAAATGGATATATAGAACCTTGCGAAAAGCCTTTGCATTTTGATGGATTCAACTCTTTATTCCTGTACAGAAGATTATATCGGTGCCACACCACATTGGATGGGTTCACTTTTGATAATGGGAAAGCAGAAAGAAGGAAAGATCTCTCTTTAGAAGCGTTCTGTCATGAATATGATGGGAAAAAACCGGTTTTGCTTGCTGGATTAGCTGATACTTGGCCAGCGAGAAGTACCTGGACAACTGATCAGCTATTGATGAATTATGGAGATACAGCATTTAAGATATCCCAAAGGAGTTCACGGAAGATCACAATGAAATTCAAAGATTATGTCTCATACATGAAAGTTCAGCATGATGAGGATCCCCTGTATATTTTTGATGACAAGTTTGGTGAAGTTGCACCAGGCTTGTTGAAAGATTACAGCGTGCCTCATCTATTTCAAGAAGACTTTTTTGATGTCTTAGATAGAGATCAGAGACCACCTTTTAGATGGCTCATTATTGGGCCAGAAAGGTCTGGTGCTTCTTGGCATGTTGATCCAGCTCTTACCAGTGCTTGGAATACTCTTCTTTGTGGGCGTAAGAGGTGGGCATTGTATCCTCCAGGAAGAGTGCCTACGGGTGTTACAGTACATGTAAATGAAGAAGATGGTGATGTCAATATTGAGACTCCAACATCATTGCAGTGGTGGCTGGACTTTTATCCACTTCTTGCTGATGAAGACAAGCCAATCGAGTGTACCCAATTACCTGGAGAAACAATATATGTTCCAAGTGGATGGTGGCACTGTGTGTTAAATTTGGAAACCACTATTGCTGTCACACAGAATTTTGTAAATTCCAAAAACTTTGAATTTGTATGCCTTGATATGGCTCCAGGTTATCATCATAAAGGAGTTTGCCGTGCTGGAATGCTTGCTTTGGACAAAGGAAGTTTTGAGAATGGCAAAATAGATGCATTCTGTGATAAAGATGGCTTGAACCATCCAGATCTGACTAGGAAGGAGAAGAGAGTTAGAACTTACCAACCCGGGAAGGATCCAGATAACCAAAGTGCAAGAAATGGTGCCTGTAAAAGTTATGATTTGTGGAATCAAGATTTTTATTATGATATAAATTTCTTGTCCGTGTTTTTGGATCAAGAGAAAGACCACTACAGTTCTCTGTGGAGCTCAAGCAATTGCATAGGACAACGAGAAATGAGAGAATGGTTATGCAAGCTTTGGGTTGGAAAACCAGGAATGAGAGAGCTTATATGGAAGGGAGCATGTCTTGCCCTAAATGCAGGCAAGTGGCTAGAGCGCACAGCACAAATTTGCACCTTCCATGGTTTGCCTCCTCCCACAGATGATGAGAGGCTTCCTGTTGGCACTGGAAGCAATCCTGTCTATCTCATTTCTGACTCTGTAGTTAAGCTCTTTGTTGAAGGAGGGCTAGAGGCATCAATTCACAGTTTAGGTGCTGAGCTTGAATTTTACAGTCTACTATGTAAAGTCAACTCCCCTTTGAAAGATCATATTCCTGATGTCTTGGCTAGCGGGATTCTCTTTCTTGATAATGGATCTTATACAATTGTGCCTTGGGATGGTAAAGGAGTGCCTGATGTGATTGCTAAGTGCAATTTGGTTCCTGCAAAGTGTATGGAGGATGGTTTCTCTTTTGGTGTATGGAGCAAGAAAGATTTTGAATATAAAAAAGCAGGAGCATCAACATATGAATCTATTAGTTCGGCTGAATGCGCAGGGATATGGCCTTATATCATAACAAAACGATGCAAAGGAAAGATTTTTGCTCGTTTAAGAGATACACTTCCAAGGGATGATGTTCTAAATTTAGCTTCTTTTTTGGGAGAGCAGCTGCATAATCTTCATATCTTGCCCCATCCATCTTTGAACGATTCAATACACTTGTCCCTTGATAATGGTTTTATGGATGAAATTTCTGATAAAATTGGCATTCCAGCTGAATGGGAGATTTTCATTAGAACTCTAGCCAGGAAGAGAAAGGATGTCTCCAGCCGCTTAACTAAGTGGGGAGATCCAATTCCTAGCAGCCTGATGGAAAAAGTTGACGAATACCTCCCAAATGATTTTGCAAAGTTGCTCAATATATTCCAGGATGAAAATGGCCAAGACAAAGTTAATAAACCTTGCTGCTGGATACACTCAGATATCATGGATGACAATATTCACATGGAACCATGTAGGATTAGTTCTTGCTTGACCACACCTGCCACAGATTCTTGTCTGACAGGCAATGGTTCTGCAGATGGCTGCACAGAGGAAGTATCGTGGCGTCCTGGCCACATTCTTGATTTCAGTGATCTGTCTATAGGTGACCCTATTTGGGACTTGATCCCCATACACCTTGATGTCTTTAGAGGAGACCCTTGTCTGCTTAAGCAGTTTCTAGAAAGCTATAAACTTCCTTTAGTGAGAAGAACATCGCAGAATGGATTAGAGCATGATGATAAGTTCAGGCGACTATCGTACCATGCCATGTGCTACTGTATTTTGCATGAAGAGAATGTGTTGGGGGCAATTTTTAGTTTATGGAAGGAGCTGAAGGTGGCAAAATCATGGGAAGAAGTTGAGGAGACAGTATGGGGAGAGCTGAATAATTACGACGGCTTCTGCTGA 2913 0.4188 MTEISETHTRGLKDRRADALGDLRLLPDEIILAILASFGARDVSRLACVSSVMYILCNEEPLWMSLCLNNVKDHLQYKGSWKKTALLQEHMPNGYIEPCEKPLHFDGFNSLFLYRRLYRCHTTLDGFTFDNGKAERRKDLSLEAFCHEYDGKKPVLLAGLADTWPARSTWTTDQLLMNYGDTAFKISQRSSRKITMKFKDYVSYMKVQHDEDPLYIFDDKFGEVAPGLLKDYSVPHLFQEDFFDVLDRDQRPPFRWLIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPTGVTVHVNEEDGDVNIETPTSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSKNFEFVCLDMAPGYHHKGVCRAGMLALDKGSFENGKIDAFCDKDGLNHPDLTRKEKRVRTYQPGKDPDNQSARNGACKSYDLWNQDFYYDINFLSVFLDQEKDHYSSLWSSSNCIGQREMREWLCKLWVGKPGMRELIWKGACLALNAGKWLERTAQICTFHGLPPPTDDERLPVGTGSNPVYLISDSVVKLFVEGGLEASIHSLGAELEFYSLLCKVNSPLKDHIPDVLASGILFLDNGSYTIVPWDGKGVPDVIAKCNLVPAKCMEDGFSFGVWSKKDFEYKKAGASTYESISSAECAGIWPYIITKRCKGKIFARLRDTLPRDDVLNLASFLGEQLHNLHILPHPSLNDSIHLSLDNGFMDEISDKIGIPAEWEIFIRTLARKRKDVSSRLTKWGDPIPSSLMEKVDEYLPNDFAKLLNIFQDENGQDKVNKPCCWIHSDIMDDNIHMEPCRISSCLTTPATDSCLTGNGSADGCTEEVSWRPGHILDFSDLSIGDPIWDLIPIHLDVFRGDPCLLKQFLESYKLPLVRRTSQNGLEHDDKFRRLSYHAMCYCILHEENVLGAIFSLWKELKVAKSWEEVEETVWGELNNYDGFC* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0482 970 ProSiteProfiles F-box domain profile. 20 66 IPR001810 GO:0005515
Vvi18g0482 970 ProSiteProfiles JmjC domain profile. 223 386 IPR003347 -
Vvi18g0482 970 Pfam F-box domain 26 63 IPR001810 GO:0005515
Vvi18g0482 970 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 20 593 - -
Vvi18g0482 970 SUPERFAMILY Protein kinase-like (PK-like) 675 922 IPR011009 -
Vvi18g0482 970 Gene3D Cupin 122 371 - -
Vvi18g0482 970 SMART cupin_9 214 381 IPR003347 -
Vvi18g0482 970 SUPERFAMILY Clavaminate synthase-like 134 377 - -
Vvi18g0482 970 FunFam F-box protein At1g78280 114 371 - -
Vvi18g0482 970 Pfam Cupin-like domain 152 372 IPR041667 -
Vvi18g0482 970 Gene3D - 14 95 - -
Vvi18g0482 970 SUPERFAMILY F-box domain 20 83 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0482 Vvi-Chr18 4706246 4722020 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0482 9 966 Glycosyltransferase AT1G78280 62.048 0.0 1222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vvi18g0482 Cupin_8 3.3e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0482 - - vvi:100242134 2045.78