Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0458 ATGGAGCCCTCGGATATTCCGTTTAGTTCTAATCCCTCAGCTTGTTCGTCTTCCCATGATAATATCTACAACGAGCTCCTCAATCTATTTCCAGACACTCGCCCAAATTCCCTCGAGCCACTACCACTGCCAAGCAGCTTGCTGTGCTCACCAAAAGCAGTGCCACTGGAAGGAAATACAAAAGCATCCAATGAAGATACTGGGGATGTCACCGTGACCTTATGCATTGGTCTTCCTGATAATAAGGATGGTTCCAAGAATGCAGTTGATAAAAGAGATTCAGATATAGCGGCTACCCAGTACTGGATACCCACACCTGCACAAATCCTCATTGGCTTCACCCACTTTTCGTGCCACATCTGCAACAAAACTTTCAACCGCTACAACAATCTCCAGATGCATATGTGGGGTCATGGATCACAGTATCGTAAAGGACCCGAATCATTGAAAGGAACCCAACCACGAGCTGTTCTAAGCATCCCATGCTACTGTTGCACACAAGGGTGCAAAAACAACATAGACCACCCAAGGGCAAAGCCGCTGAAGGATTTCCGAACCTTGCAGACGCATTACAAGAGGAAGCATGGTATGAAGCCTTTCATGTGTCGGAAATGTGGAAAGTGCTTGGCTGTGAAAGGTGACTGGCGAACTCACGAGAAGAATTGCGGCAAGCGTTGGCTTTGCGCGTGTGGTTCGGACTTCAAACACAAGAGATCACTCAAAGACCACATTAAAGCATTTGGATCTGGTCACGGCCCATTTCCTCCTCCATTTGAAGGAGTCCAGCTCCGAGAGGATGCTGTGCCTTTTCCGTTTGTTTAA 822 0.4745 MEPSDIPFSSNPSACSSSHDNIYNELLNLFPDTRPNSLEPLPLPSSLLCSPKAVPLEGNTKASNEDTGDVTVTLCIGLPDNKDGSKNAVDKRDSDIAATQYWIPTPAQILIGFTHFSCHICNKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAVLSIPCYCCTQGCKNNIDHPRAKPLKDFRTLQTHYKRKHGMKPFMCRKCGKCLAVKGDWRTHEKNCGKRWLCACGSDFKHKRSLKDHIKAFGSGHGPFPPPFEGVQLREDAVPFPFV* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0458 273 SUPERFAMILY beta-beta-alpha zinc fingers 111 138 IPR036236 -
Vvi18g0458 273 SMART c2h2final6 163 195 IPR013087 -
Vvi18g0458 273 SMART c2h2final6 116 138 IPR013087 -
Vvi18g0458 273 SMART c2h2final6 200 220 IPR013087 -
Vvi18g0458 273 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Vvi18g0458 273 FunFam Zinc finger protein WIP2 169 251 - -
Vvi18g0458 273 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 143 IPR013087 -
Vvi18g0458 273 Gene3D Classic Zinc Finger 115 138 - -
Vvi18g0458 273 PANTHER ZINC FINGER PROTEIN WIP2 32 254 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0458 Vvi-Chr18 4531169 4532101 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0458 27 268 C2H2 Transcription Factor Family AT1G34790 60.806 1.41e-108 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi18g0458 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0458 - - vvi:100264302 573.163