Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0457 ATGGCTTACCAGCATTATCGATCACCCTTCGGTGACACCACGTTTACCAAAGTCTTTGTTGGGGGGCTAGCTTGGGAGACGCCCACCGATGTAATGAGAAGACATTTCGAGCAGTTTGGAGAGATTCTTGAAGCTGTTATCATCACCGATAAGAATACCGGAAAATCCAAAGGATACGGATTCGTTACTTTTCGTGATCCGGAATCGGCAAGGAGAGCTTGTGTTGATCCGAACCCTGTGATAGATGGGAGAAGAGCCAATTGCAACATTGCTTCATTGGGGCGCCCACGCCCTTCACCACCTCGAGGGAGAAATCAAGGTGGCAATCCCTATCACGCAGGCGCATCCCAGGGTGCATCATCCTTCAGCGGAGTTCCGGCACCACTGGCTCCACCTCCACCGCCGCCGCCGCCACCACCACCTCCGCCTCCGGTCATTTATCCACCTTACGGGTACGCAACCTATACACCTGATTATGGGTACCACCAACAGAGCCTGTATAACCCACAACTTCAACAACCATACTATCATCAACTCTACGGAGCGTCATCTTCTACTGTGGCTTCTCCGTATTATTACGGATATTCTTTACAAGCTTCCAGGGGAACATTTTCAGGACCCCAGGCGCACCGTGTTCAAGGACCCTCTTATCTCTACTATCCTACGCAAATGGAGGGCTCCTTCCCCACCTATCCTCCTCCTCCTGTTCCTCCAACCCTACAACCAACATCAAGGCCTCCTTTTCCCTCTTCTACTGATTCACAGACAGTACAGCAATCCTCCACAGAAACAGAAGCTGGGGTCAGTCATTCAGAAAGCCCAACCACCTAA 831 0.5126 MAYQHYRSPFGDTTFTKVFVGGLAWETPTDVMRRHFEQFGEILEAVIITDKNTGKSKGYGFVTFRDPESARRACVDPNPVIDGRRANCNIASLGRPRPSPPRGRNQGGNPYHAGASQGASSFSGVPAPLAPPPPPPPPPPPPPPVIYPPYGYATYTPDYGYHQQSLYNPQLQQPYYHQLYGASSSTVASPYYYGYSLQASRGTFSGPQAHRVQGPSYLYYPTQMEGSFPTYPPPPVPPTLQPTSRPPFPSSTDSQTVQQSSTETEAGVSHSESPTT* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0457 276 MobiDBLite consensus disorder prediction 126 145 - -
Vvi18g0457 276 MobiDBLite consensus disorder prediction 86 145 - -
Vvi18g0457 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Vvi18g0457 276 SMART rrm1_1 17 89 IPR000504 GO:0003723
Vvi18g0457 276 SUPERFAMILY RNA-binding domain, RBD 9 115 IPR035979 GO:0003676
Vvi18g0457 276 MobiDBLite consensus disorder prediction 225 276 - -
Vvi18g0457 276 CDD RRM_RBM24_RBM38_like 16 91 - -
Vvi18g0457 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Vvi18g0457 276 MobiDBLite consensus disorder prediction 227 245 - -
Vvi18g0457 276 MobiDBLite consensus disorder prediction 246 276 - -
Vvi18g0457 276 Gene3D - 4 111 IPR012677 -
Vvi18g0457 276 PANTHER BOULE-RELATED 5 258 - -
Vvi18g0457 276 FunFam RNA-binding protein 24-B isoform X1 3 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0457 Vvi-Chr18 4520978 4529604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0457 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 8.93e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0457 K25006 - vvi:100253997 454.907