Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0453 ATGTCCATGGCCTCCTCCTCCTCCACAGCCTCCGGCGGTCTCCACCTGGAGGCGTTGCCACTCATCGATCTCCGCTTCCTTTCCCAATCAGAACTCCAGGCCCTCTCTCTCACTTCTTCACACTCCTCCGATCTCCGCCGCTGCGACGACGTTGTCATCCCCAAAATTGACCGCTCCATCTTCAATGAAAGCGCCGGTAGCCGAAAACAGACATACTCTCGCCTCCGCCTCGCCCCTCGCAAGCCCGATATCGCTGCCACCATTCCCCGCCGGCCCAGATTCTCCCCCCACCTTAACCAGAAAGCTGCCCTTGAGCCCGTCGATGAAGAAAACACCTTAATTATCGGACTCCTTAAAGGCTTGTTCGCTACCGAGACTCACGCCGATGACCTAATCCCGGTTCAAGTCGAATATAGGGAATCGTCTAATGAGATTTTGCAAAATATTCCCATTGATGTTGTTGCCGACAGTGGGAGGAAGAGGAAGCGAGGGCGACCCAAGAGCGAGAAGACGATAGCTGTTTATCAGAATGGTGGAAGCGGTGAAGGTGGGGGTATGGGGATTATAAATAATAATGGTGTCGTCGTAGATGTTGCGGCTTTGGCGAATGCGGAGGACCCTTTTGGTCCGGAATTGAGGAGGAGGACAGAGGGTTTGACCACAGAGGAAGAGTTGTTAGGGTTCTTGACGGGTCTGAGTGGGCAATGGGGGAGTAGGAGGAAGAAGAGGAAGATTGTGGAGGCAAGTGATTTCGGAGATGTATTGCCCCAGGGTTGGAAGCTTTTGCTCTCTATGAAGAGGAAAGAAGGCCGCGTCTGGTTATTCTGTCGCAGATACATAAGCCCTAATGGGCAGCAGTTTGTGTCCTGCAAGGAAGTTTCTTCATGTTTGCTTTCTTTGTCTGGACTCCAAGATGCAAGACAGCCAAATTATGGTCACAATGATGAGAATAGTCAACTTGCCCATCAAATTTCTCCTGGAAATGCAGCTGGTCTTACCCTCAAAGATGACAATAGTAAGGATGGTCTTGTTTGCTCTTCACCATCAACCGTTACTACTATACCAACTCATCATGAGAAGCAAGCCACCTTATTGAACATGGGTAATTCATGGGAGGTCAAAGTGGGGGAAATTTTAAAATGCCATAAATGTGCCATGACATTTGATGAGAAGGATGATTTATTGCACCACCTATCATCATCTCACAATGGGACTGCAAATAGCTGTAAACTCAGTTCATCCATCTGCAATGAGGTGATAATGAAAGAGGGAAAATATGAATGTCGGTTCTGCCATGAGATATTCCATGAAGAGAATGGTTACAATCGCCATGTTGAGATCCACACAAAAACATCTGTTAAGAACGCTGAAACATCAGTGCTAAATAGTGATCCCACTCCCTTGGATGGACTTGTCAGTGATTCTATTGAGAAAACTACAAATGGCCAAGCCAATGATGGAATGAGTTTTGGTCTTACCCATAAGACACCAAAAGCAGATTCTATTAAAGAAACTCATATTGGCAAATCCAATAATTCTTTCTTTCATATGGGGCAGCACTTTGAGGTGACCCAAAATGATGGAACTTTTGCTGACGAATCTGTTGACGAGCAGGATAAAGATTGTAATACAAGAAATGATAGACTGGGGAAGGTGCATGAGGCTCCTGATATTTTAGCTGCTAAAACTAGTCTTGCTGAAGCTGCCTTGTCCACAAGTGAGGATAGAAGTATTCAGAAAGCTTCCAATGAGTCAAATGTTCTCAAATGCCCCACAGATGGAATCAATGAATTATGTGGCAGCGAGGAAAGAATTTCTGAAAGTTATTCAGTTGCTCCTTCTGAAAATCAGCAAACATGCGAGGTTGAAGACAATGTGCATGGTGCTTCCACTAGCTTAAAGAAAGAGCTCAGGCAGGAGATAAGTTATGAAAGTGGTCTAGCTACTCCAAATGATAAAGGAGAGATATGTGCTGAAATTGCCGAGGATAGGCTTTTTACTAGCACAATCAAAGAGATGAAAATTGACTGCAAGGATGAATTTGGGCAACATAAGCCAATATTTGATTTTGACAATTGTGCTACATATGGTAAAGATATTGCAATTAATGTCAAGCAGCAAAGAGTTTCTGAAGACTGCCATTTGCCTGTTCCTTTCCCAAACGAGCAAAAATGTGGTTTTGTTAATAATATGAATGGAGTTTTATCTCCTCCCATAGTGGAGTCCAATCAGCAAAGATGTTCTAAAAGCGTCACTCTATCTGGCAATAACCAGACATATGATGTCAACAATAATGGCAGTTGGGTTTCTACTGGCACTGGCAGGCCTAGAGTTGAAGCGGACAACTCTGGGAATAATGAACTAACATTTGGCTTTGGTAGCAATCACCCTCAGCCTAATGAGGATGCTGTGACCTGTGTTGAGTGGGGAATAAGTTCTGGAAGCTGTTCTCTTGTTTCATCCTGGAAGGATCAAACATGCTTTAAAAATAACACCAATTGGGTTTCTGCTTGCACAAAACCCCTGCAGGAAAAAGGTTCTGAAAGTGGTGCTCTCACTCCATCTTGTAAGGAACAAATATGGGGCGTTGAAAATAATGGGAATAAGTTTTCCATTGGCACAATGGATAAGCTCAAATTTGATGAAATAAACAACTCTAGGAATAGTGAGCTAATCATTACTTCTGGCAACATGAGCAACACTGGAGTAGGTATGGATGTTGTGACAAGTGTTCAGAAGCAAAGAGGATCTGAAGGTTATTTATCTATTCTTTCTAAGAATGAGCAAAAAATTGGTGCTGAAAGTCCTGTTACTGGGTTTTGCAATAGTGCAGTGGCAGAGCTCAAACTGGGAGGACATTCTGAGAGTGGATTTTGTATTCAATCTGATGGTGAGCAAAAATGCGGCATTGGTAATGATTTGAAGAGGGTTTATCCTGGAAGATTCTGGGAGGTTCCAAGACTTAGGGAAGTAGAAAATCCTAGTAATACTGAGCTGATGATTGGTTTCGGCAGCAGTCATGCCCAACCTGGTCAGGACGTCATGGCTGAGGTTATGTGGAGAAGTGATGAAGAAAATGTGCTGCAGAGTGCTTTAGGCAATTCTTCATCTTCAATGGTGCTTTCATCCAGTTGCTTTCCCACATTTGATGTAATCTCAGATAAGGGGTTAAATGGACTCTGTACTGCAAATGAGAAGTTCAACACTGATAGCATAGAAAATCTGAAATTCAGTTCTCTGACTGCACAAAGAAACTCTCTTTCAGAAGATTCCAAAGTATTGTCATATGATGCAGGGATGGAACAAGGGTTCAATTCTTCTGAATGGCTTGAAAAGGAAACTTTGTTGCCAAAAGTAGCTGGGAGGCATCTGGTTGCCGCATTATGCATCTGGTGCAGAAATGAGTTCCATCATGAGAATGTTGGCAATGCAACACAAACAGGTTCAACTGGTTTAATGTGTCCAACCTGCAAGGTTAAGTTCCCAGGGGAACTCAATTTATTCTAG 3507 0.4368 MSMASSSSTASGGLHLEALPLIDLRFLSQSELQALSLTSSHSSDLRRCDDVVIPKIDRSIFNESAGSRKQTYSRLRLAPRKPDIAATIPRRPRFSPHLNQKAALEPVDEENTLIIGLLKGLFATETHADDLIPVQVEYRESSNEILQNIPIDVVADSGRKRKRGRPKSEKTIAVYQNGGSGEGGGMGIINNNGVVVDVAALANAEDPFGPELRRRTEGLTTEEELLGFLTGLSGQWGSRRKKRKIVEASDFGDVLPQGWKLLLSMKRKEGRVWLFCRRYISPNGQQFVSCKEVSSCLLSLSGLQDARQPNYGHNDENSQLAHQISPGNAAGLTLKDDNSKDGLVCSSPSTVTTIPTHHEKQATLLNMGNSWEVKVGEILKCHKCAMTFDEKDDLLHHLSSSHNGTANSCKLSSSICNEVIMKEGKYECRFCHEIFHEENGYNRHVEIHTKTSVKNAETSVLNSDPTPLDGLVSDSIEKTTNGQANDGMSFGLTHKTPKADSIKETHIGKSNNSFFHMGQHFEVTQNDGTFADESVDEQDKDCNTRNDRLGKVHEAPDILAAKTSLAEAALSTSEDRSIQKASNESNVLKCPTDGINELCGSEERISESYSVAPSENQQTCEVEDNVHGASTSLKKELRQEISYESGLATPNDKGEICAEIAEDRLFTSTIKEMKIDCKDEFGQHKPIFDFDNCATYGKDIAINVKQQRVSEDCHLPVPFPNEQKCGFVNNMNGVLSPPIVESNQQRCSKSVTLSGNNQTYDVNNNGSWVSTGTGRPRVEADNSGNNELTFGFGSNHPQPNEDAVTCVEWGISSGSCSLVSSWKDQTCFKNNTNWVSACTKPLQEKGSESGALTPSCKEQIWGVENNGNKFSIGTMDKLKFDEINNSRNSELIITSGNMSNTGVGMDVVTSVQKQRGSEGYLSILSKNEQKIGAESPVTGFCNSAVAELKLGGHSESGFCIQSDGEQKCGIGNDLKRVYPGRFWEVPRLREVENPSNTELMIGFGSSHAQPGQDVMAEVMWRSDEENVLQSALGNSSSSMVLSSSCFPTFDVISDKGLNGLCTANEKFNTDSIENLKFSSLTAQRNSLSEDSKVLSYDAGMEQGFNSSEWLEKETLLPKVAGRHLVAALCIWCRNEFHHENVGNATQTGSTGLMCPTCKVKFPGELNLF* 1169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0453 1168 ProSiteProfiles Zinc finger C2H2 type domain profile. 379 407 IPR013087 -
Vvi18g0453 1168 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 3 1167 IPR037472 -
Vvi18g0453 1168 ProSiteProfiles Zinc finger C2H2 type domain profile. 426 453 IPR013087 -
Vvi18g0453 1168 SMART c2h2final6 379 402 IPR013087 -
Vvi18g0453 1168 SMART c2h2final6 426 448 IPR013087 -
Vvi18g0453 1168 SUPERFAMILY DNA-binding domain 250 299 IPR016177 GO:0003677
Vvi18g0453 1168 ProSitePatterns Zinc finger C2H2 type domain signature. 381 402 IPR013087 -
Vvi18g0453 1168 ProSitePatterns Zinc finger C2H2 type domain signature. 428 448 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0453 Vvi-Chr18 4466930 4475029 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi18g0453 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0453 - - vvi:100248904 2266.89