Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g0449 | ATGGGTAGGTTATGCTGTTTTAATGCCGCCTGTTCTCAGCTTGTAGGAGGAGCTTCCTCTTGTAGCTCTGGTAAAGGAAGAAGTCAAGAGGGTATGATCAAGTATGGTTTCAGCCTCGTAAAAGGGAAAGCTAATCATCCCATGGAGGATTATCATGTTGCTAAGTTTGTACAGATAGAAGAACATGAGCTTGGGTTGTTTGCTATTTATGATGGCCATTTGGGAGATCGTGTGCCCCTCTACCTACAAAAGCATTTGTTTTCCAATATCCTTAAAGAGGAAGAGTTTTGGGTTGATCCTGGAGGATCTATTTCAAAAGCCTATGAGAAAACAGACCAGGCAATTCTTGCTAACAGTTCCAACTTGGGACGAGGAGGGTCCACTGCCGTTACTGCAATTTTGATTAATGGTCGTAGATTATGGATTGCCAACGTGGGAGATTCACGAGCAGTTCTTTCTAAAGGGGGTCAGGCCATACAGATGACCACAGACCATGAACCCAACACTGAAAGAGGCAGCATTGAGAACAGAGGTGGTTTTGTTTCAAACATGCCAGGAGATGTCCCCAGAGTCAATGGGCAGCTGGCTGTTTCTCGGGCTTTTGGAGATAAGAGCCTTAAATCACACTTACGATCAGATCCTGACATACAAGATACTACTCTAGATTTCAACTCTGAAATTCTAATTCTTGCAAGTGATGGCCTTTGGAAGGTAATGAACAATCAAGAAGCGGTTGATATTGTGAGAAGAATCAAAGACCCTGAGAAGGCAGCTAAGCAACTAACTGCTGAAGCACTGAGAAGAGACAGTAAAGATGATATATCTTGTGTTGTGGTTAGATTTAGGGGATAA | 852 | 0.4308 | MGRLCCFNAACSQLVGGASSCSSGKGRSQEGMIKYGFSLVKGKANHPMEDYHVAKFVQIEEHELGLFAIYDGHLGDRVPLYLQKHLFSNILKEEEFWVDPGGSISKAYEKTDQAILANSSNLGRGGSTAVTAILINGRRLWIANVGDSRAVLSKGGQAIQMTTDHEPNTERGSIENRGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIQDTTLDFNSEILILASDGLWKVMNNQEAVDIVRRIKDPEKAAKQLTAEALRRDSKDDISCVVVRFRG* | 284 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g0449 | 283 | FunFam | Probable protein phosphatase 2C 39 | 24 | 282 | - | - | |
| Vvi18g0449 | 283 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 21 | - | - | |
| Vvi18g0449 | 283 | SMART | PP2C_SIG_2 | 45 | 281 | IPR001932 | - | |
| Vvi18g0449 | 283 | Pfam | Protein phosphatase 2C | 43 | 274 | IPR001932 | - | |
| Vvi18g0449 | 283 | Gene3D | - | 29 | 283 | IPR036457 | - | |
| Vvi18g0449 | 283 | ProSiteProfiles | PPM-type phosphatase domain profile. | 34 | 281 | IPR001932 | - | |
| Vvi18g0449 | 283 | SUPERFAMILY | PP2C-like | 29 | 282 | IPR036457 | - | |
| Vvi18g0449 | 283 | CDD | PP2Cc | 33 | 281 | IPR001932 | - | |
| Vvi18g0449 | 283 | PANTHER | PROTEIN PHOSPHATASE | 29 | 281 | IPR015655 | GO:0004722|GO:0006470 | |
| Vvi18g0449 | 283 | SMART | PP2C_4 | 30 | 279 | IPR001932 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi18g0449 | Vvi-Chr18 | 4442623 | 4445330 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi18g0449 | 1 | 282 | PP2C-type Phosphatase Gene Family | AT1G22280 | 77.083 | 4.30e-162 | 450 |