Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0447 ATGGGAAGGTCTCCTTGCTGTGATGAGAATGGTCTGAAGAAAGGGCCTTGGACTCCTGAAGAAGATCAGAAGCTGGTCAGCTACGTTCAGAAACATGGCCATGGAAGCTGGAGAGCTCTCCCTAAGCTTGCAGGTCTTAACAGATGTGGAAAGAGCTGTAGGTTGAGATGGACGAATTATTTAAGGCCTGATATTAAAAGAGGAAAATTTTCTCAAGAAGAAGAACAGACAATTCTGCATCTCCATTCCATCCTGGGAAACAAATGGTCCGCAATTGCATCGCACCTCCCTGGCCGGACGGACAACGAAATTAAGAATTTCTGGAATACCCATCTAAAGAAGAAGCTCATTCAGATGGGGTTTGATCCCATGACACACCAACCGAGGACCGACGATCTCTTCAGCAGCTTGACCCATCTATTAGCTCTGGCTAACCTCAGAAACCTCATGGAGCACCACTCACTGGATGATCATTCACTGAAAATACAGGCAGATGCAATTCAGTTGGCTAAGCTTCAGTATTTAGAGTATCTTCTCCAATCTACAGTTTCGGCATCTACTAATTCATATAGCCCAAATGGCATTGCAAACATGGAGGCTTTCAGCTTCTCGAGTTCATCAATTCCTCCTATGAAAGAAAACCCAGTTTTAAGTTCATTACAACTGGAGAACCTAGCCTCATTTTCTCTTGACAGTGATACTTCCCAACCACTCCACCACCCAAGCCCCTTAGCTCATTTGACGGCCCCACAAGTCCCTTTTCAAACACCTTTGAACAGTGAAATGGGCCAAACTTCAAACCCCAATTCTCCTTGGGTTCTTCCATCTCCTAGTACCACTCTTCCTCCACTTGTAACCAATCTTTCAATGAACCATCCAGGAGAGGGCAGTAGCATTTCTAGCTATGGAGGAGGACCCTCTCCCTACTGGTCTGAACTTTTTGAAGACCATTTAATGCATGACGACCTTTCTTAG 975 0.4513 MGRSPCCDENGLKKGPWTPEEDQKLVSYVQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDDLFSSLTHLLALANLRNLMEHHSLDDHSLKIQADAIQLAKLQYLEYLLQSTVSASTNSYSPNGIANMEAFSFSSSSIPPMKENPVLSSLQLENLASFSLDSDTSQPLHHPSPLAHLTAPQVPFQTPLNSEMGQTSNPNSPWVLPSPSTTLPPLVTNLSMNHPGEGSSISSYGGGPSPYWSELFEDHLMHDDLS* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0447 324 CDD SANT 69 112 IPR001005 -
Vvi18g0447 324 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vvi18g0447 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi18g0447 324 CDD SANT 16 61 IPR001005 -
Vvi18g0447 324 FunFam Transcription factor MYB39 69 130 - -
Vvi18g0447 324 Gene3D - 69 116 - -
Vvi18g0447 324 FunFam MYB-related transcription factor 13 66 - -
Vvi18g0447 324 SMART sant 66 114 IPR001005 -
Vvi18g0447 324 SMART sant 13 63 IPR001005 -
Vvi18g0447 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi18g0447 324 Gene3D - 13 66 - -
Vvi18g0447 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi18g0447 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 202 - -
Vvi18g0447 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi18g0447 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi18g0447 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0447 Vvi-Chr18 4425466 4426609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0447 1 320 MYB Transcription Factor Family AT1G34670 55.435 6.05e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi18g0447 Myb_DNA-binding 9.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0447 K09422 - vvi:100243754 642.884